| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,322,589 – 7,322,690 |
| Length | 101 |
| Max. P | 0.507395 |
| Location | 7,322,589 – 7,322,690 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -13.75 |
| Energy contribution | -15.87 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.51 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7322589 101 - 22224390 CGCCCUCCUUU-CUGACUAUAUUUGAAUGCCCCUUACGCUUUAAGUUGAAGGGUACAGGGUAUCUUGCAGUGAUGCUCAUUCUUUGCAUUAUCAAGGAU----UCA .((((((((((-(.......(((((((.((.......))))))))).))))))...))))).(((((..(((((((.........))))))))))))..----... ( -25.30) >DroSec_CAF1 72792 101 - 1 CGCCCUCCUUU-CUGACUAUAUUUGAAUGCCCCUUACGCUUUAAGUUGAAGCGUACAGGGUAUUUUGCAGUGCUGCUCAGUUUUUGCAUCAUCAAGGUA----UCA ......((((.-.(((........((((((((..((((((((.....))))))))..))))))))(((((.(((....)))..))))))))..))))..----... ( -30.80) >DroSim_CAF1 72330 101 - 1 CGCCCUCCUUU-CUGACUAUAUUUGAAUGCCCCUUACGCUUUAAGUUGAAGCGUACAGGGUAUUUUGCAGUGCUGCUCAGUUUUUGCAUCAUCAAGGUA----UCA ......((((.-.(((........((((((((..((((((((.....))))))))..))))))))(((((.(((....)))..))))))))..))))..----... ( -30.80) >DroEre_CAF1 82762 93 - 1 CGCCCUUCU--UCUGGCUACAUUUGAAUGCCCCUUACGCGCUGAGUUG-------CAGGAUACGUUGCAGUACUGCUCAUU----GUAUCUAUAAGAUACAAUGCG .(((.....--...)))...................(((((.(..(((-------(((......))))))..).))..(((----(((((.....))))))))))) ( -22.00) >consensus CGCCCUCCUUU_CUGACUAUAUUUGAAUGCCCCUUACGCUUUAAGUUGAAGCGUACAGGGUAUUUUGCAGUGCUGCUCAGUUUUUGCAUCAUCAAGGUA____UCA .....................(((((((((((((((((((((.....)))))))).))))......(((....))).........))))..))))).......... (-13.75 = -15.87 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:56 2006