Locus 2727

Sequence ID X_DroMel_CAF1
Location 7,313,096 – 7,313,201
Length 105
Max. P 0.724468
window4463

overview

Window 3

Location 7,313,096 – 7,313,201
Length 105
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 89.54
Mean single sequence MFE -23.73
Consensus MFE -20.70
Energy contribution -20.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.87
SVM decision value 0.41
SVM RNA-class probability 0.724468
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7313096 105 - 22224390
-GGAAGAAAAAGAGAGGGAAUAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA
-...........(((((((((....(((((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))....)))))))))...... ( -23.40)
>DroPse_CAF1 95235 102 - 1
-GGUUGUUACAAAGGGUGAGCC--AGAGCGCUGAAUGUAUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUU-UUUCUAUGCAG
-(((..((((.....)))))))--...(((..((((((.((((((((.....)))))))).))).(((.((((........))))..)))....-.)))..))).. ( -23.30)
>DroSim_CAF1 62557 105 - 1
-GGAAGAAAAAGAGAAGGAAUAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA
-...........(((((((((....(((((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))....)))))))))...... ( -23.80)
>DroEre_CAF1 73424 105 - 1
-GAAUGAAAAAGAGAGGGAGUAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAG
-...........(((((((((....(((((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))....)))))))))...... ( -23.40)
>DroYak_CAF1 90874 106 - 1
AGAAAGAGAAGGAGAGGGAGCAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA
.........((((((((..((((....(((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))))...))))))))...... ( -25.20)
>DroPer_CAF1 125176 102 - 1
-GGUUGUUACAAAGGGUGAGCC--AGAGCGCUGAAUGUAUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUU-UUUCUAUGCAG
-(((..((((.....)))))))--...(((..((((((.((((((((.....)))))))).))).(((.((((........))))..)))....-.)))..))).. ( -23.30)
>consensus
_GGAAGAAAAAGAGAGGGAGCAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA
...........................(((..((((((.((((((((.....)))))))).))).(((.((((........))))..)))......)))..))).. (-20.70 = -20.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:53 2006