Locus 2726

Sequence ID X_DroMel_CAF1
Location 7,309,122 – 7,309,228
Length 106
Max. P 0.533980
window4462

overview

Window 2

Location 7,309,122 – 7,309,228
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 69.27
Mean single sequence MFE -19.85
Consensus MFE -11.32
Energy contribution -12.12
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.57
SVM decision value 0.00
SVM RNA-class probability 0.533980
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7309122 106 - 22224390
GACUGCAUGUGUGUGUUCUAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUAUUAGAAAUAUAUUAGAAACACAGCUAUAAACCCCGGUCAUAGGUAAUAGAAA
(((((.(((((((((((((.((((.((....)))))).)))))))))))))...............(((........))).......))))).............. ( -24.90)
>DroSec_CAF1 58844 104 - 1
GACUGCAUGUGUGAG--CAAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUUCGAUAUAUACAUUAGAAAGACAGCUAUAUACGCCGGUUGUUAGUAAUAGAAA
(((((((..((((((--.....))))))..))))))).......(((.(((((.....))))).........(((((((.........))))))).)))....... ( -22.40)
>DroSim_CAF1 58485 100 - 1
GACUGCAUGUGUGAG--CAAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUUCGAUAUAUAUAUUAGAAA----GCUAUAUACGCCGGUUGUUAGUAAUAGAAA
(((((((..((((((--.....))))))..)))))))..........((((((.....))))))........----((((...((....))...))))........ ( -19.70)
>DroEre_CAF1 69289 84 - 1
GACUGCAUGUGUGCG--CCAGUUUCACAGCUGUAGUCAGCAAUAUAUCUGUAUUCAAAGUAU--AUUCGAAAAAGAA--------CCCAA-CACCAA---------
(((((((((((.((.--...))..))))..))))))).(.((((((.((........)))))--)))).........--------.....-......--------- ( -16.20)
>DroYak_CAF1 86671 90 - 1
CACUGCAUGUGUGAG--CCAGUUUCACAGCUCUAGUCAAUAAUAUA----UACUCGAAAUAU--ACUAGAAGAAAAA--------CCCGCUUAUUAGCAGGAGAAA
..((((....(((((--(..((((......((((((..........----............--))))))....)))--------)..))))))..))))...... ( -16.05)
>consensus
GACUGCAUGUGUGAG__CAAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUUCGAAAUAUA_AUUAGAAAAACAGCUAUA_ACCCCGGUUAUUAGUAAUAGAAA
(((((((..((((((.......))))))..)))))))..................................................................... (-11.32 = -12.12 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:52 2006