Locus 2725

Sequence ID X_DroMel_CAF1
Location 7,308,660 – 7,308,753
Length 93
Max. P 0.677603
window4461

overview

Window 1

Location 7,308,660 – 7,308,753
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.90
Mean single sequence MFE -28.09
Consensus MFE -21.41
Energy contribution -21.61
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -1.82
Structure conservation index 0.76
SVM decision value 0.30
SVM RNA-class probability 0.677603
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7308660 93 + 22224390
UGAUUUAGCCGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC-CUUUUU-CCAUGGCU
......((((...(((..((((.((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))-.)))).-.))))))) ( -30.00)
>DroSec_CAF1 58383 93 + 1
UGAUUUAGCUGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC-CUUUUU-CCAUGGCA
.......(((...(((..((((.((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))-.)))).-.)))))). ( -28.40)
>DroSim_CAF1 58025 93 + 1
UGAUUUAGCUGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC-CUUUUU-CCAUGGCA
.......(((...(((..((((.((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))-.)))).-.)))))). ( -28.40)
>DroEre_CAF1 68869 89 + 1
UGAUUUAGCCGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGCUUUUCCUUUUUCCU------
...............((.(((..((((((((((.((.(((((.((((.....)))).))))).))....))))))))))..))).))..------ ( -25.50)
>DroYak_CAF1 86190 95 + 1
UGAUUUAGCCCAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUUCCUUUUUGCCACGGCA
.......(((........((((.((((((((.(.((.(((((.((((.....)))).))))).)).).....)))))))).))))......))). ( -28.14)
>consensus
UGAUUUAGCCGAAAUGAUGAAACGAAAGCCCAUGAAGGCUUAAGUGUCAGGCACACAUGAGCGUUGGGAAUGGGGUUUC_CUUUUU_CCAUGGCA
.......(((.............((((.(((((.((.(((((.((((.....)))).))))).))....))))).))))............))). (-21.41 = -21.61 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:51 2006