Locus 2724

Sequence ID X_DroMel_CAF1
Location 7,307,024 – 7,307,121
Length 97
Max. P 0.703302
window4460

overview

Window 0

Location 7,307,024 – 7,307,121
Length 97
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 82.78
Mean single sequence MFE -23.93
Consensus MFE -17.57
Energy contribution -17.16
Covariance contribution -0.42
Combinations/Pair 1.23
Mean z-score -1.88
Structure conservation index 0.73
SVM decision value 0.36
SVM RNA-class probability 0.703302
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7307024 97 + 22224390
UACA--------CCCCCUGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUCAAAAUGCUGCUCGCCCUGCUAAUGUGCAC-AUCGCAGAGCAAAGACAAAAA
....--------.....((((.(------((((((.((((((............))))))..)))))))((((((..(((......))).-...)).))))...)))).... ( -22.10)
>DroVir_CAF1 81314 103 + 1
CACA--------CCCC-AGCCAGGUACGAGUAUUUCAUGUCAUUUCAAUAUCAUUGAUGUAAAAAUGUUCCGCGCUCUGUUAAUGUGCGCCAAAGCGGGGCAGAAACAACAA
....--------((((-.((..(((..((((((((.((((((............))))))..)))))))).((((.........)))))))...))))))............ ( -21.40)
>DroPse_CAF1 89776 105 + 1
GACCCCGUCCGUCCAUCCGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUAAAAAUGCUGUUCGCUCUGUUAAUGUGCGC-AACGCGGGGCAAAGACAAAAC
(.((((((..............(------((((((.((((((............))))))..)))))))((((((.(.......).))).-))))))))))........... ( -24.60)
>DroEre_CAF1 67258 97 + 1
UACA--------CCCCCUGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUCAAAAUGCUGCUCGCUCUGCUAAUGUGCAC-AUCGCAGAGCAAAGACAAAAA
....--------.....((((.(------((((((.((((((............))))))..)))))))....(((((((..(((....)-)).)))))))...)))).... ( -25.80)
>DroYak_CAF1 84484 97 + 1
UACA--------CCCCCUGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUCAAAAUGCUGCUCGCUCUGCUAAUGUGCAC-AUCGCGGAGCAAAGACAAAAA
....--------.....((((.(------((((((.((((((............))))))..)))))))....(((((((..(((....)-)).)))))))...)))).... ( -25.10)
>DroPer_CAF1 118867 105 + 1
GACCCCGUCCGUCCAUCCGUCAG------GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUAAAAAUGCUGUUCGCUCUGUUAAUGUGCGC-AACGCGGGGCAAAGACAAAAC
(.((((((..............(------((((((.((((((............))))))..)))))))((((((.(.......).))).-))))))))))........... ( -24.60)
>consensus
UACA________CCCCCUGUCAG______GUAUUUCAUAUCAUUUCAAUAUCAUUGAUGUAAAAAUGCUGCUCGCUCUGCUAAUGUGCAC_AACGCGGAGCAAAGACAAAAA
..................(((........((((((.((((((............))))))..)))))).....(((((((..............)))))))...)))..... (-17.57 = -17.16 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:50 2006