Locus 2723

Sequence ID X_DroMel_CAF1
Location 7,306,580 – 7,306,670
Length 90
Max. P 0.815402
window4459

overview

Window 9

Location 7,306,580 – 7,306,670
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.48
Mean single sequence MFE -29.27
Consensus MFE -15.25
Energy contribution -16.92
Covariance contribution 1.67
Combinations/Pair 1.00
Mean z-score -2.17
Structure conservation index 0.52
SVM decision value 0.66
SVM RNA-class probability 0.815402
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7306580 90 + 22224390
-------CC--AGUUUCCCAUUUUCCA---ACCAUACCCUGACCUGGCUGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU
-------..--.((....((((((((.---.......((((((..(((((......)))))))))))((((((.....))))))))))))))...))..... ( -31.40)
>DroPse_CAF1 89219 86 + 1
-------CUCUACCGUCC--CUUUCCGGAGGCCAUCUCC-------GCCGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU
-------...(((((..(--.(((((((((.....))))-------(((((((((((........))))).......)))).)))))))..)..)).))).. ( -26.11)
>DroEre_CAF1 66803 97 + 1
CAGUUUCCC--AGUUUCCCAUUUUCCA---GCCAUACCCUGACCUGGAUGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGCUCGCGUAAU
.........--.((....((((((((.---.......((((((((((((....))))))..))))))((((((.....))))))))))))))...))..... ( -33.30)
>DroYak_CAF1 83983 97 + 1
CAGUUUCCC--AGUUUCCCAUUUCCCA---ACCAUACCCUGACCUGGCUGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU
..((....(--(.((((((((...(((---(..((((((((((..(((((......))))))))))))..)))..)))).))).))))).))...))..... ( -29.20)
>DroAna_CAF1 63177 84 + 1
-------CC--AAUUUCUCACAU--CA---GGUAUCCCCUGGCC----CGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU
-------.(--(.((((((((((--((---(((((.(((((((.----.((.......)).))))))).))))..)))))))).))))).)).......... ( -27.30)
>DroPer_CAF1 118298 86 + 1
-------CUCUACCGUCC--UUUUCCGGAGGCCAUCUCC-------GCCGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU
-------...(((((..(--((((((((((.....))))-------(((((((((((........))))).......)))).)))))))).)..)).))).. ( -28.31)
>consensus
_______CC__AGUUUCCCAUUUUCCA___GCCAUACCCUGACC__GCCGCCUGUCCAGCUGUCAGGGCAUAUUAUUGGUGUGCGGAAAAUGUUCGCGUAAU
..................((((((((........................((((.(.....).))))((((((.....)))))))))))))).......... (-15.25 = -16.92 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:49 2006