Locus 2721

Sequence ID X_DroMel_CAF1
Location 7,300,492 – 7,300,584
Length 92
Max. P 0.701313
window4456

overview

Window 6

Location 7,300,492 – 7,300,584
Length 92
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 81.74
Mean single sequence MFE -27.67
Consensus MFE -14.36
Energy contribution -13.97
Covariance contribution -0.40
Combinations/Pair 1.32
Mean z-score -2.68
Structure conservation index 0.52
SVM decision value 0.35
SVM RNA-class probability 0.701313
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7300492 92 + 22224390
--UUGGCC---CGGUAG--------AGAAUGGCCAAAUGACCAAAUGG--------UCAAAUGGCUUUUCAUUAUUGUUAUUACAAAUGCCGCGGUCAUUAUUAUUUGCUCGU
--.(((((---(((((.--------.(((.(((((..(((((....))--------)))..))))).)))....((((....)))).))))).)))))............... ( -33.20)
>DroPse_CAF1 81742 100 + 1
--AUGGUC---CGGUAGUCCCUGCCAAAAUGGCUAAAUGACCAAAUGG--------CCAAAUGGCUUUUCAUUAUUGUUAUUACAAAUGCCGCGGUCAUUAUUAUUUGCUCGU
--(((..(---(((((......((((...((((((..........)))--------)))..)))).........((((....)))).))))).)..))).............. ( -24.60)
>DroEre_CAF1 60690 100 + 1
--UUGGCC---CGGUGG--------AGAAUGGCCAAAUGACCAAAUGGCCAAAUGGCCAAAUGGCUUUUCAUUAUUGUUAUUACAAAUGCCGCGGUCAUUAUUAUUUGCUCGU
--.(((((---(((((.--------..((((((..((((((((..(((((....)))))..)))....)))))...)))))).....))))).)))))............... ( -30.90)
>DroMoj_CAF1 83458 84 + 1
---UGGCC------------------AAAUGUCCAAAUGGUCAAAUGG--------CCAAAUGGCUUUUCAUUAUUGUUAUUACAAAUGCCGUGGCCAUUAUUAUUUGCUCGU
---(((((------------------(..((.((....)).))..)))--------)))(((((((...((((..(((....)))))))....)))))))............. ( -24.50)
>DroAna_CAF1 53676 95 + 1
AAAUGGCCACAUGGCCG--------AGA--GACCAAAGGGCCAAAUGG--------CCAAAUGGCUUUUCAUUAUUGUUAUUACAAAUGCCGCGGUCAUUAUUAUUUGCUUGU
.(((((((...((((.(--------(((--..(((...((((....))--------))...)))..))))....((((....))))..)))).)))))))............. ( -29.70)
>DroPer_CAF1 110731 100 + 1
--AUGGUC---CGGUAGUCCCUGCCAAAAUGGCUAAAUGACCAAAUGG--------CCAAAUGACUUUUCAUUAUUGUUAUUACAAAUGCCGCGGUCAUUAUUAUUUGCUCGU
--.(((((---.((....))..(((.....))).....)))))(((((--------((.(((((....))))).((((....)))).......)))))))............. ( -23.10)
>consensus
__AUGGCC___CGGUAG________AAAAUGGCCAAAUGACCAAAUGG________CCAAAUGGCUUUUCAUUAUUGUUAUUACAAAUGCCGCGGUCAUUAUUAUUUGCUCGU
...(((((......................)))))(((((((...((((......))))((((((...........))))))...........)))))))............. (-14.36 = -13.97 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:47 2006