Locus 2716

Sequence ID X_DroMel_CAF1
Location 7,284,871 – 7,284,972
Length 101
Max. P 0.577815
window4445

overview

Window 5

Location 7,284,871 – 7,284,972
Length 101
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.87
Mean single sequence MFE -28.02
Consensus MFE -16.79
Energy contribution -17.98
Covariance contribution 1.20
Combinations/Pair 1.23
Mean z-score -1.43
Structure conservation index 0.60
SVM decision value 0.09
SVM RNA-class probability 0.577815
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7284871 101 - 22224390
G--AGCGGCGAAGUGGCAAAGGGAACUUGCCACGUUGCGCGUUUGUU--GGCGGCCGCAGAUAAACGCAUAAAUGACGAGCUGAAAUCUUCUUUAUGUUGUCGAG--
.--....((((.(((((((.(....)))))))).))))(((((((((--.((....)).))))))))).....((((((..((((......))))..))))))..-- ( -36.70)
>DroVir_CAF1 49286 87 - 1
U--UGC---GAG--AGUAUGAAAAACUUGCCACAACGCGCC-UUGUU--GGUGGUCGGAGAUAAACGCAUAAAUGACGAGCUGAAAUCUUUUUGCUG----------
.--.((---(((--(..........((.(((((((((....-.))))--.))))).))((((....((...........))....))))))))))..---------- ( -15.50)
>DroPse_CAF1 63865 92 - 1
GAAAGCAGUGAAGUGGCAAGGGGUACUUGCCACAACGCGCAUUUGUU--GGCGGCUGGAGAUAAACGCAUAAAUGACGAGAUGAAAUCUUUUUU-------------
(((((..(((..((((((((.....))))))))..)))((((((((.--.(((..((....))..)))))))))).)..........)))))..------------- ( -26.70)
>DroWil_CAF1 43000 89 - 1
G--AGCGGUGAAGUGGCAAAGGAAACUUGCCACAA--CGCGUUUGUUUGGGCGGUUGGAGAUAAACGCAUAAAUGACGAGCUGAAAUCUUUUU--------------
(--(.((((...(((((((.(....))))))))..--.((((((((((..........))))))))))...........))))...)).....-------------- ( -28.60)
>DroYak_CAF1 60936 103 - 1
G--AGCGGUGAAGUGGCAGGGAGCGCUUGCCACGUUGCGCGUUUGUU--GGCGGCCGCAGAUAAACGCAUAAAUGACGAGCUGAAAUCUUCUUUAUGUUGUUGAGUC
.--.(((((...((((((((.....))))))))....(((.......--.)))))))).(((.((((((((((.((.((.......)).)))))))).))))..))) ( -34.50)
>DroPer_CAF1 91347 92 - 1
GAAAGCAGUGAAGUGGCAAGGGGUACUUGCCACAACGCGCAUUUGUU--GGCGGCCGGAGAUAAACGCAUAAAUGACGAGAUGAAAUCUUUUUU-------------
(((((..(((..((((((((.....))))))))..)))((((((((.--.(((............)))))))))).)..........)))))..------------- ( -26.10)
>consensus
G__AGCGGUGAAGUGGCAAGGGGAACUUGCCACAACGCGCGUUUGUU__GGCGGCCGGAGAUAAACGCAUAAAUGACGAGCUGAAAUCUUUUUU_____________
....((.(((..((((((((.....))))))))..))))).((((((...(((............)))......))))))........................... (-16.79 = -17.98 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:38 2006