Locus 2714

Sequence ID X_DroMel_CAF1
Location 7,280,863 – 7,280,983
Length 120
Max. P 0.974988
window4442

overview

Window 2

Location 7,280,863 – 7,280,983
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -22.57
Consensus MFE -22.57
Energy contribution -22.57
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.16
Structure conservation index 1.00
SVM decision value 1.74
SVM RNA-class probability 0.974988
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7280863 120 + 22224390
AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC
........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70)
>DroEre_CAF1 40320 120 + 1
AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC
........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70)
>DroWil_CAF1 39150 120 + 1
AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC
........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70)
>DroYak_CAF1 56727 120 + 1
AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC
........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70)
>DroMoj_CAF1 49151 120 + 1
AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC
........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. ( -22.70)
>DroAna_CAF1 37314 118 + 1
AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAA--
........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....))))))))-- ( -21.90)
>consensus
AUUUCUCAUAUUUUUAAUUUCUGCACUUUGUCCCUAUUUAUCCUGGCGUUGGCAGUUUUUAAUUUCUCUGCUUUUCCGGUGCAAAGUUAAUGAAUAAUUGUGCGCACUUUUGCGGCAAAC
........((((((((((((.((((((..(((............)))...(((((............))))).....))))))))))))).))))).((((.((((....)))))))).. (-22.57 = -22.57 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:34 2006