Locus 2712

Sequence ID X_DroMel_CAF1
Location 7,275,012 – 7,275,105
Length 93
Max. P 0.549307
window4439

overview

Window 9

Location 7,275,012 – 7,275,105
Length 93
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 87.17
Mean single sequence MFE -23.83
Consensus MFE -16.58
Energy contribution -17.32
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.70
SVM decision value 0.03
SVM RNA-class probability 0.549307
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7275012 93 + 22224390
UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCUCUUGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU-GUACCGCUUUUAGGGCAAU
(((((((((.......)))))))))......((((...((((.(((.((....)).)).)...))))..)))).-.....(((.....)))... ( -22.60)
>DroSec_CAF1 24938 93 + 1
UAAUUGAUUUGAAAUUGAUUAAUUAAUUCUCCCCCUCUAGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU-GUGCCGCCUUUUGGGCAAU
(((((((((.......))))))))).......(((...((((.(((.......(((((.......)))))....-.))).))))...))).... ( -23.30)
>DroSim_CAF1 24983 81 + 1
UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCUCUUGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU-------------GGGCAAU
(((((((((.......))))))))).(((..((((...((((.(((.((....)).)).)...))))..)))).-------------.)))... ( -26.70)
>DroEre_CAF1 34368 94 + 1
UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCCCUUGGCAGCAACGUAAACGAUGACUGUGCCUUUUGGGCCAAGCCCCCUUUUGGGCAAU
(((((((((.......))))))))).........(((..((((.((.((....)).))....))))....)))....((((......))))... ( -22.70)
>consensus
UAAUUGAUUUGAAAUUGAUUAAUUAAGUCUCCCCCUCUUGGCUGCAACGUAAACGAUGACUGUGCCAUUGGGGU_GUGCCGCCUUUUGGGCAAU
(((((((((.......)))))))))......((((...((((.(((.((....)).)).)...))))..))))..................... (-16.58 = -17.32 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:31 2006