| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,267,861 – 7,267,953 |
| Length | 92 |
| Max. P | 0.809142 |
| Location | 7,267,861 – 7,267,953 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 86.58 |
| Mean single sequence MFE | -10.55 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.55 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7267861 92 - 22224390 UAUAAAAACAAAAAAAAAAACCAAAAAAACUAAAAACCAACACACAGCCCGGAAACUGUCAUUAUGCAUUCUGAUGAUAUUUUCGCCGCCGU ...........................................((.((.((((((.((((((((.......))))))))))))))..)).)) ( -11.50) >DroSec_CAF1 17818 80 - 1 UCCAAAAACAAAAA-A---------AAAACUAAAAACC--CACACAGCCCGGAAACUGUCAUUAUGCAUUCUGAUGAUAUUUUCGCCGCCGU ..............-.---------.............--...((.((.((((((.((((((((.......))))))))))))))..)).)) ( -11.50) >DroSim_CAF1 17485 81 - 1 UCCAAAAACAAAAAAA---------AAAACUAAAAACC--CACACAGCCCGGAAACUGACAUUAUGCAUUCUGAUGAUAUUUUCGCCGCCGU ................---------.............--...((.((.((((((.((.(((((.......))))).))))))))..)).)) ( -6.60) >DroEre_CAF1 27526 82 - 1 UCCAAAAACAAAGGAAAAAA----A----CCAAAAACC--CACACAGCCCGGAAACUGUCAUUAUGCAUUCUGAUGAUAUUUUCGCCGCCGU (((.........))).....----.----.........--...((.((.((((((.((((((((.......))))))))))))))..)).)) ( -12.60) >consensus UCCAAAAACAAAAAAA_________AAAACUAAAAACC__CACACAGCCCGGAAACUGUCAUUAUGCAUUCUGAUGAUAUUUUCGCCGCCGU ...........................................((.((.((((((.((((((((.......))))))))))))))..)).)) (-10.30 = -10.55 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:29 2006