| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 913,704 – 913,796 |
| Length | 92 |
| Max. P | 0.814658 |
| Location | 913,704 – 913,796 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 97.10 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -18.20 |
| Energy contribution | -19.87 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.31 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 913704 92 + 22224390 UUACAGCAAGAAUUAUCAACAUAGUUGCACUCAUUAUGGUCGAUAAUGCUCGUAACUUAUCGUAAGAUAAGUUCAACAGCACAUGCAGUAAU ((((.(((...((((((..((((((.......))))))...))))))(((.((((((((((....))))))))..)))))...))).)))). ( -25.10) >DroSec_CAF1 5232 92 + 1 UUACAGCAAGAAUUACCAACAUAGUUGCACUCAUUAUGGUCGAUAAUGCUCGUAACUUAUCGCAAGAUAAGUUAAACAGCACAUACAGUAAU ((((...............((((((.......))))))........((((..(((((((((....)))))))))...))))......)))). ( -21.40) >DroSim_CAF1 5415 92 + 1 UUACAGCAAGAAUUACCAACAUAGUUGCACUCAUUAUGGUCGAUAAUGCUCGUAACUUAUCGUAAGAUAAGUUAAACAGCACAUACAGUAAU ((((...............((((((.......))))))........((((..(((((((((....)))))))))...))))......)))). ( -20.40) >consensus UUACAGCAAGAAUUACCAACAUAGUUGCACUCAUUAUGGUCGAUAAUGCUCGUAACUUAUCGUAAGAUAAGUUAAACAGCACAUACAGUAAU ((((...............((((((.......))))))........((((..(((((((((....)))))))))...))))......)))). (-18.20 = -19.87 + 1.67)
| Location | 913,704 – 913,796 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 97.10 |
| Mean single sequence MFE | -21.17 |
| Consensus MFE | -20.97 |
| Energy contribution | -20.87 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 913704 92 - 22224390 AUUACUGCAUGUGCUGUUGAACUUAUCUUACGAUAAGUUACGAGCAUUAUCGACCAUAAUGAGUGCAACUAUGUUGAUAAUUCUUGCUGUAA .((((.(((.(((((....((((((((....))))))))...)))))(((((((.(((.((....))..)))))))))).....))).)))) ( -22.50) >DroSec_CAF1 5232 92 - 1 AUUACUGUAUGUGCUGUUUAACUUAUCUUGCGAUAAGUUACGAGCAUUAUCGACCAUAAUGAGUGCAACUAUGUUGGUAAUUCUUGCUGUAA .((((.(((.(((((...(((((((((....)))))))))..)))))(((((((.(((.((....))..)))))))))).....))).)))) ( -20.50) >DroSim_CAF1 5415 92 - 1 AUUACUGUAUGUGCUGUUUAACUUAUCUUACGAUAAGUUACGAGCAUUAUCGACCAUAAUGAGUGCAACUAUGUUGGUAAUUCUUGCUGUAA .((((.(((.(((((...(((((((((....)))))))))..)))))(((((((.(((.((....))..)))))))))).....))).)))) ( -20.50) >consensus AUUACUGUAUGUGCUGUUUAACUUAUCUUACGAUAAGUUACGAGCAUUAUCGACCAUAAUGAGUGCAACUAUGUUGGUAAUUCUUGCUGUAA .((((.(((.(((((...(((((((((....)))))))))..)))))(((((((.(((.((....))..)))))))))).....))).)))) (-20.97 = -20.87 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:32 2006