| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,264,970 – 7,265,069 |
| Length | 99 |
| Max. P | 0.528833 |
| Location | 7,264,970 – 7,265,069 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 66.86 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -9.30 |
| Energy contribution | -8.55 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.42 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7264970 99 + 22224390 GUUUUAAUAUCUUUACUAAGAUCACAUUUU-------GCUUUU-CAGCUUUAUAUCUGGAAUUACACUUUUGGGUACUCCCACAGAGGUUUAUCUUUAUGGUGCUCA ........(((((....)))))........-------......-.(((.(((((...(((...((.((((((((....)))).))))))...))).))))).))).. ( -16.20) >DroPse_CAF1 41702 85 + 1 CUGUUGUUG---------------CAC------UCUUUACCCC-CAGCUUCAUCUCCGGCAUCACUCUGCUGGGCACUCCCACGGAGGUGUAUCUGUAUGGUGCCCA ........(---------------(((------(...(((...-.((...(((((((((((......)))((((....))))))))))))...))))).)))))... ( -25.10) >DroSec_CAF1 14965 99 + 1 GUUUUGAUGUAUUUACUAAAAUCAAUUUUG-------GUUUUU-UAGCUUUAUAUCUGGAAUUACUCUUUUGGGUACACCCACAGAGGUUUAUCUUUAUGGAGCUCA ..............(((((((....)))))-------))....-.(((((((((...(((....((((..((((....)))).)))).....))).))))))))).. ( -22.30) >DroSim_CAF1 14622 99 + 1 GUUUUGAUGUCUUUACUAAAAUCAAAUUUG-------GUUUUU-CAGCUUUAUAUCUGGAAUUACACUUUUGGGUACACCCACAGAGGUUUAUCUUUAUGGAGCUCA ..((((((............))))))....-------......-.(((((((((...(((...((.((((((((....)))).))))))...))).))))))))).. ( -22.00) >DroEre_CAF1 24702 97 + 1 UUAUUUAUGUCUUAAUUGGGAUAACAUU---------UCUUUU-CAGCUUUAUAUCUGGAAUUACGCUUUUGGGCACACCCACCGAGGUUUACCUGUAUGGAGCUCA .......((((((....)))))).....---------......-.((((((((((..((....((.(((.((((....))))..)))))...)).)))))))))).. ( -21.10) >DroMoj_CAF1 23466 92 + 1 -------------UAA-UAGCGCCGUCUCUGUCUCU-CUUUCGCCAGCUUUAUUUCGGGCAUCACUCUGCUGGGCACACCCACCGAGGUUUACCUGUACGGUGCCCA -------------...-..(((((((....(.....-)......(((.(..((((((((((......)))((((....)))))))))))..).))).)))))))... ( -25.10) >consensus GUUUUGAUGUCUUUACUAAGAUCACAUUU________GUUUUU_CAGCUUUAUAUCUGGAAUUACUCUUUUGGGCACACCCACAGAGGUUUAUCUGUAUGGAGCUCA ..............................................((.((((((((((((......)))((((....))))))))((....))..))))).))... ( -9.30 = -8.55 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:28 2006