Locus 2706

Sequence ID X_DroMel_CAF1
Location 7,253,839 – 7,253,930
Length 91
Max. P 0.894008
window4428

overview

Window 8

Location 7,253,839 – 7,253,930
Length 91
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 80.30
Mean single sequence MFE -24.57
Consensus MFE -18.35
Energy contribution -19.02
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.75
SVM decision value 0.98
SVM RNA-class probability 0.894008
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7253839 91 + 22224390
C-------------CGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU--C---GUACU--------
.-------------(((......(((((((((((((((......))))))))......(((((((...))))))).........)))))))......)--)---)....-------- ( -22.20)
>DroPse_CAF1 28968 93 + 1
G-------------CUGUGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUGCCCUC---GCCUU--------
(-------------(.(.((...(((((((((((((((......))))))))......(((((((...))))))).........)))))))....)).)..---))...-------- ( -24.20)
>DroEre_CAF1 9224 99 + 1
C-------------CGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU--C---GUACUUCCACUAC
.-------------(((......(((((((((((((((......))))))))......(((((((...))))))).........)))))))......)--)---)............ ( -22.20)
>DroMoj_CAF1 8663 105 + 1
CGGGGCAGACAGAAGGACGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUCCUACAAGUUAUUUGCC----CAAACCCUCGACGCUCGCUGUGCG--------
..(((((((...((((((((....))))))))((((((......)))))).........................))))))----)..........(((.......)))-------- ( -29.00)
>DroAna_CAF1 6089 92 + 1
C------------CCGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU--U---GUGCU--------
.------------..(((((...(((((((((((((((......))))))))......(((((((...))))))).........))))))).......--.---)))))-------- ( -25.60)
>DroPer_CAF1 55340 93 + 1
G-------------CUGUGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUGCCCUC---GCCUU--------
(-------------(.(.((...(((((((((((((((......))))))))......(((((((...))))))).........)))))))....)).)..---))...-------- ( -24.20)
>consensus
C_____________CGGCGCUCAGGUGUCCUUAGUGGUGUUCUAAUUACUAACAAACUUAAUUUGCUACAAGUUAUUUUCUUGCGGACACCGCUUACU__C___GUACU________
.......................(((((((((((((((......))))))))......(((((((...))))))).........))))))).......................... (-18.35 = -19.02 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:22 2006