Locus 2704

Sequence ID X_DroMel_CAF1
Location 7,251,692 – 7,251,782
Length 90
Max. P 0.511995
window4424

overview

Window 4

Location 7,251,692 – 7,251,782
Length 90
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 75.97
Mean single sequence MFE -26.83
Consensus MFE -16.17
Energy contribution -15.62
Covariance contribution -0.55
Combinations/Pair 1.20
Mean z-score -1.32
Structure conservation index 0.60
SVM decision value -0.04
SVM RNA-class probability 0.511995
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7251692 90 + 22224390
----------------UGUGUAUGUAUGUUGAAGUCCUGU--AGUCCUGGGUCCUUGCUUGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA
----------------(((((((.....(((((.((..((--(...((((((.(......)..))))))...)))..)).(((....))).))))))))))))..... ( -22.70)
>DroSec_CAF1 1993 86 + 1
----------------UGUGUGUGUGUGUUGAAGUCCUGU--UGUCCUGGGUCCU----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA
----------------..((((((..(.(((((...(((.--((..((((((...----....)))))).))...)))..(((....))).))))))..))))))... ( -25.50)
>DroSim_CAF1 429 86 + 1
----------------UGUGUGUGUGUGUUGAAGUCCUGU--UGUCCUGGGUCCC----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA
----------------..((((((..(.(((((...(((.--((..((((((...----....)))))).))...)))..(((....))).))))))..))))))... ( -25.50)
>DroEre_CAF1 7398 102 + 1
AGUGCACGAGUGUGGGUGUGAGUGUAUGCUGAAGUCCUGU--AGUCCUGGGUCUU----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA
.((((((((.((..((..(.(((....))).)...))..)--).))((((((...----....))))))........((((((....))).)))..))))))...... ( -35.20)
>DroYak_CAF1 24872 92 + 1
UGUGUAUAAUUGUG----------UGUGUUGAAGUGCUGU--AGUCCUGGGCCCU----UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA
.........(((((----------(((((((((...((((--(...((((((...----....))))))...)).)))..(((....))).))))).))))))))).. ( -27.40)
>DroAna_CAF1 3978 71 + 1
---------------------------------GUCCUGCUCGGGCCCGGGUCCU----UGCUGUCCGGGCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA
---------------------------------.....(((((((((((((.(..----....)))))))).........(((....)))..)))))).......... ( -24.70)
>consensus
________________UGUGUGUGUGUGUUGAAGUCCUGU__AGUCCUGGGUCCU____UGAUGCCCAGCCAUAUUAGAAGCCAAAAGGCAUUCGAGUGCACAUAAGA
.................................(..((........((((((...........))))))........((((((....))).))).))..)........ (-16.17 = -15.62 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:18 2006