Locus 2703

Sequence ID X_DroMel_CAF1
Location 7,249,711 – 7,249,810
Length 99
Max. P 0.621616
window4423

overview

Window 3

Location 7,249,711 – 7,249,810
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.87
Mean single sequence MFE -24.23
Consensus MFE -18.05
Energy contribution -17.63
Covariance contribution -0.42
Combinations/Pair 1.12
Mean z-score -1.44
Structure conservation index 0.74
SVM decision value 0.18
SVM RNA-class probability 0.621616
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7249711 99 - 22224390
------GCUGCUGUCAAU-UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACAC--------AUCGACGCACA----UGG--UUGGUG
------.....((((..(-(((((..((.(((....))).))..)))))).......(.(((((((.......))))))))))))(--------((((((.....----..)--)))))) ( -26.10)
>DroPse_CAF1 25726 109 - 1
ACUGCUGCUGCUGUCAAU-UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCAACGC--------UCCCACACACCCAUCUAG--UUGGAG
...((.(((((((((...-...)))))..((((..((((......))))..))))))))(((((((.......)))))))....))--------..........(((.....--.))).. ( -23.50)
>DroEre_CAF1 6184 99 - 1
------GCUGCUGUCAAU-UCAAACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACAC--------ACCGACGCACA----UGG--UUGCUG
------(.((.((((..(-(((((..((.(((....))).))..)))))).......(.(((((((.......)))))))))))))--------).)...(((..----...--.))).. ( -22.70)
>DroYak_CAF1 23563 110 - 1
------UCUGCUGUCAAUUUCAGAUGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACACAUCGACACAUCGACGCACA----UGGCUUUGGUG
------...(((((..(((((((((.((.(((....))).)).)))))))))..)))))(((((((.......)))))))(((....)))...((((((.((...----..)).)))))) ( -29.90)
>DroAna_CAF1 2898 93 - 1
--------UGCUGUCAAU-UUGGACGGAUUUGGAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACGC--------AUACACAGACA----CUC--UC----
--------(((.(((...-.......(((((.((((.......)))).)))))....(.(((((((.......)))))))))))))--------)..........----...--..---- ( -19.70)
>DroPer_CAF1 51771 107 - 1
--UGCUGCUGCUGUCAAU-UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCAACGC--------UCCCACACACCCAUCUAG--UUGGAG
--.((.(((((((((...-...)))))..((((..((((......))))..))))))))(((((((.......)))))))....))--------..........(((.....--.))).. ( -23.50)
>consensus
______GCUGCUGUCAAU_UCAGACGGAUUUGAAGUCAACUCAAUUUGAAAUCAAUAGUGUGUGAAUAAUCCUUUCACACCGACAC________ACCCACACACA____UGG__UUGGUG
.........(((((..((.(((((..((.(((....))).))..))))).))..)))))(((((((.......)))))))........................................ (-18.05 = -17.63 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:17 2006