| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,248,846 – 7,248,981 |
| Length | 135 |
| Max. P | 0.969827 |
| Location | 7,248,846 – 7,248,941 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 94.37 |
| Mean single sequence MFE | -32.73 |
| Consensus MFE | -32.31 |
| Energy contribution | -31.87 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.969827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7248846 95 + 22224390 CCGAAAUUUUUGGGGCUUCCCCGUGGACUGUGCACUUUUUUGGUUGUUGUCUGGGAAUCGGAAGGCAGUCACUGCAAUUGCAGUUGCAUUUCCAG ...........((((...)))).((((..(((((.......(..(((..((((.....))))..)))..)(((((....)))))))))).)))). ( -31.30) >DroEre_CAF1 5308 94 + 1 CCGAA-AUUUUGGGGCUUCCCCGUGGACUGUGCACUUUUUUGGCUGUUGUCUGGGAAUCGGAAGGCAGUCACUGCAAUUGCAGUUGCAUUUCCAG .....-.....((((...)))).((((..(((((.......((((((..((((.....))))..))))))(((((....)))))))))).)))). ( -35.30) >DroYak_CAF1 22658 90 + 1 ----A-UUUUUGGGGCUUCCCCGUGGACUGUGCACUUUUUUGGUUGUUGUCUGGGAAUCGGAAGGCAGUCGCUGCAAUUGCAGUUGCAUUUCCAG ----.-.....((((...)))).((((..(((((.......(..(((..((((.....))))..)))..)(((((....)))))))))).)))). ( -31.60) >consensus CCGAA_UUUUUGGGGCUUCCCCGUGGACUGUGCACUUUUUUGGUUGUUGUCUGGGAAUCGGAAGGCAGUCACUGCAAUUGCAGUUGCAUUUCCAG ...........((((...)))).((((..(((((.......((((((..((((.....))))..))))))(((((....)))))))))).)))). (-32.31 = -31.87 + -0.44)
| Location | 7,248,886 – 7,248,981 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 79.40 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -16.92 |
| Energy contribution | -18.68 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7248886 95 + 22224390 UGGUUGUUGUCUGGGAAUCGGAAGGCAGUCACUGCAAUUGCAGUUGCAUUUCCAGCUGCACUUGCAGAUGUGGCACUUGAAUUGCAUGCAUAGCU ((..(((..((((.....))))..)))..))((((((.((((((((......)))))))).))))))((((((((.......))).))))).... ( -34.60) >DroPse_CAF1 25150 77 + 1 UGGCUGC----UGGGUAUCC--------------CCCAUGCAGCUGCAGUUGCCGUUGCAGUUGCAGAUGUGGCACUCGAAUUGCAUGCAUAGCU .((((((----((((.....--------------)))).))))))((((((((((((((....))))...))))).....))))).......... ( -28.40) >DroEre_CAF1 5347 95 + 1 UGGCUGUUGUCUGGGAAUCGGAAGGCAGUCACUGCAAUUGCAGUUGCAUUUCCAGUUGCACUUGCAGAUGUGGCACUUGAAUUGCAUGCAUAGCU (((((((..((((.....))))..)))))))((((((.((((..((......))..)))).))))))((((((((.......))).))))).... ( -33.50) >DroYak_CAF1 22693 95 + 1 UGGUUGUUGUCUGGGAAUCGGAAGGCAGUCGCUGCAAUUGCAGUUGCAUUUCCAGUUGCACUUGCAGAUGUGGCACUUGAAUUGCAUGCAUAGCU .(..(((..((((.....))))..)))..)((..((.((((((.((((........)))).)))))).))..)).........((.......)). ( -30.00) >DroPer_CAF1 51184 77 + 1 UGGCUGC----UGGGUAUCC--------------CCCAUGCAGCUGCAGUUGCCGUUGCAGUUGCAGAUGUGGCACUCGAAUUGCAUGCAUAGCU .((((((----((((.....--------------)))).))))))((((((((((((((....))))...))))).....))))).......... ( -28.40) >consensus UGGCUGUUGUCUGGGAAUCGGAAGGCAGUC_CUGCAAUUGCAGUUGCAUUUCCAGUUGCACUUGCAGAUGUGGCACUUGAAUUGCAUGCAUAGCU .((((..........................((((((.((((((((......)))))))).))))))((((((((.......))).))))))))) (-16.92 = -18.68 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:17 2006