Locus 27

Sequence ID X_DroMel_CAF1
Location 123,909 – 124,013
Length 104
Max. P 0.598002
window32

overview

Window 2

Location 123,909 – 124,013
Length 104
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 83.58
Mean single sequence MFE -30.28
Consensus MFE -21.52
Energy contribution -21.64
Covariance contribution 0.12
Combinations/Pair 1.19
Mean z-score -1.67
Structure conservation index 0.71
SVM decision value 0.13
SVM RNA-class probability 0.598002
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 123909 104 + 22224390
AAAGCUUGGCUCUGCCAGUUGGCAAAAGGAAAAACAUUUUUUAACGCUAACUGCGUGGUUGGCAGAUGUUGGAAGUGUUGCCGAG-GCACUGGUAUGAAAAAAAU------------
...(((((.(((((((....))))...((...(((((((((.((((((((((....)))))))....)))))))))))).)))))-.))..)))...........------------ ( -29.70)
>DroSec_CAF1 12006 115 + 1
AAAGCUUGGCUCUGCCAGACGGCAAAAGGAAAAAUAUU-UUUAACGCAAACUGUGUGGUUGGCAGAUGUUGGAAGUGCCGCCGAGGGCACUGGUAGGAAAAAAGUUUUA-UAUAUAU
(((((((...((((((((..((((........((((((-(((((((((.....))).))))).))))))).....))))(((...))).))))))))....))))))).-....... ( -32.32)
>DroSim_CAF1 17773 115 + 1
AAAGCUUGGCUCUGCCAGACGGCAAAAGGAAAAAUAUU-UUUAACGCAAACUGUGUGGUUGGCAGAUGUUGGAAGUGCUGCCGAGGGCACUGGUAGGAAAAAAGUUUUA-UAUAUAU
(((((((...((((((((.((..(((((........))-)))..))).....((((..(((((((((.......)).)))))))..)))))))))))....))))))).-....... ( -30.90)
>DroEre_CAF1 18285 114 + 1
AAAGCUUGGCUCUGCUAGACGGCAAAAGGAAAAACAUUU-UUAACGCUUAGUGUGUGGUUGGCAGAUAUUGGAGGUGCUGCCGAG-GCACUGACAAGAAUAA-GUGGUAAUCUAAAA
...(((((..((((((((.(.(((((((........)))-)).((((...)))))).)))))))))..(((..((((((.....)-)))))..)))...)))-))............ ( -27.80)
>DroYak_CAF1 14761 116 + 1
AAAGCUUGGCUCUGCCAGAUGGCAAAAGGAAAAACAUUUUUUAACGCUUACUGUGUGGUUGGCAGAUAUUGAAGGUGCUACCGAG-GCACUGCUAAGAAUAAGGUGGUAAUCUAAAG
....((((((((((((((......((((((......)))))).((((.....))))..)))))))).......((((((.....)-)))))))))))....((((....)))).... ( -30.70)
>consensus
AAAGCUUGGCUCUGCCAGACGGCAAAAGGAAAAACAUUUUUUAACGCUAACUGUGUGGUUGGCAGAUGUUGGAAGUGCUGCCGAG_GCACUGGUAAGAAAAAAGUGGUA_UAUAAAU
.....(..((((((((((......((((((......)))))).((((.....))))..)))))))).))..).(((((........))))).......................... (-21.52 = -21.64 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:42 2006