Locus 2699

Sequence ID X_DroMel_CAF1
Location 7,229,507 – 7,229,610
Length 103
Max. P 0.756644
window4418

overview

Window 8

Location 7,229,507 – 7,229,610
Length 103
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 97.13
Mean single sequence MFE -25.67
Consensus MFE -24.41
Energy contribution -24.29
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.95
SVM decision value 0.49
SVM RNA-class probability 0.756644
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7229507 103 + 22224390
AAGUUUGCUU-UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG--GAAAAAAGGGGAGAA
..(((((...-(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))...--...)))))))))).. ( -25.66)
>DroSec_CAF1 6053 103 + 1
AAGUUUGCUU-UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG--GAAAAAAGGGGAGAA
..(((((...-(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))...--...)))))))))).. ( -25.66)
>DroSim_CAF1 5999 103 + 1
AAGUUUGCUU-UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG--GAAAAAAGGGGAGAA
..(((((...-(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))...--...)))))))))).. ( -25.66)
>DroEre_CAF1 6239 106 + 1
AAGUUUGCUUUUACCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACCCUGACGGGGAAAAAAGGGAAGAA
..(..((((...................))))..).....((((((........))))))((((((((((.((((.(....)))))........)))))))))).. ( -25.71)
>consensus
AAGUUUGCUU_UGCCAACAAUAGAUCACAGCACCCAAACACAACCACACUAAAUUGGUUGCUUCCUUUUUGCAGGUGGCAACUCUGACG__GAAAAAAGGGGAGAA
..(((((....(((...............)))..))))).((((((........))))))((((((((((.((((.(....)))))........)))))))))).. (-24.41 = -24.29 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:13 2006