| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,228,075 – 7,228,165 |
| Length | 90 |
| Max. P | 0.638743 |
| Location | 7,228,075 – 7,228,165 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 88.52 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -18.27 |
| Energy contribution | -17.65 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7228075 90 + 22224390 CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGCAGCAGGAUUAAGUGGCCAGGGGACAUGGCUGGUGGAUUUUUUGAGAUC ..............(((((..(((.(((.(((((((.....))))..........((((((....).))))).))).))))))..))))) ( -26.70) >DroSec_CAF1 4634 90 + 1 CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGUAGUAGGACUAAGUGGCCAGGGGACAUGGCUGGUGGAUUGUUUGAGAUC ..............((((((.(((((((.(((.....(((.(((.....))))))((((((....).))))).))).))))))))))))) ( -26.10) >DroSim_CAF1 4584 90 + 1 CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGCAGUAGGACUAAGUGGCCAGGGGGCAUGGCUGGUGGAUUGUUUGAGAUC ..............((((((.(((((((.(((((((.....))))..........(((((.......))))).))).))))))))))))) ( -24.40) >DroEre_CAF1 4435 90 + 1 CAGUAGAUGAAAAUGACCUUGAAACAGUGCAUGCUGAACUGCAGCAGGAUCAGGCGGUCUGUGGACAUGGCAGAUCGGAUGCUUGAGAGC .((((............(((((..(..(((.(((......)))))))..)))))((((((((.......))))))))..))))....... ( -22.20) >consensus CAAUAGAUGAAAAUGAUCUUGAAACAGUGCAUGCUGAACUGCAGCAGGACUAAGUGGCCAGGGGACAUGGCUGGUGGAUUGUUUGAGAUC ..............(((((..((..(((.(.(((((.....)))))).)))...(.(((((.........))))).)....))..))))) (-18.27 = -17.65 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:12 2006