Locus 2696

Sequence ID X_DroMel_CAF1
Location 7,221,993 – 7,222,100
Length 107
Max. P 0.788995
window4414

overview

Window 4

Location 7,221,993 – 7,222,100
Length 107
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -15.12
Consensus MFE -7.82
Energy contribution -10.08
Covariance contribution 2.25
Combinations/Pair 1.00
Mean z-score -2.49
Structure conservation index 0.52
SVM decision value 0.58
SVM RNA-class probability 0.788995
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7221993 107 - 22224390
UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAAAAAAUACACACCAACAAAACAGAAA-AAAUACU----UCAAGAACAGCGCUGGGUUCAUAAAGA
((((((((..(((.((((........)))).))).))))))))..............................-.......----....((((........))))....... ( -18.60)
>DroSec_CAF1 29640 107 - 1
UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAA-AAAUACACACCAACAAAACAGAAAAAAAUACU----UCAAGAACAGCGCUGGGUUCAUAAAGA
((((((((..(((.((((........)))).))).)))))))).....-....................(((........)----))..((((........))))....... ( -18.70)
>DroSim_CAF1 36231 107 - 1
UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAA-AAAUACACACCAACAAAACAGAAAAAAAUACU----UCAAGAACAGCGCUGGGUUCAUAAAGA
((((((((..(((.((((........)))).))).)))))))).....-....................(((........)----))..((((........))))....... ( -18.70)
>DroAna_CAF1 31545 94 - 1
----UCGCCAGUCACGUGACAAAAUAAACGAAACAUCAUUUCAAUAAA-A------CACAAACAAAAAAUGCU-AUAUACUUAUUCCAGAAACACCA------ACAAAAUGA
----..((..(((....))).........((((.....))))......-.------..............)).-.......................------......... (  -4.50)
>consensus
UGAAAUGAAAGUCACGUGACAAAAUACACGGGACAUCAUUUCAAUAAA_AAAUACACACCAACAAAACAGAAA_AAAUACU____UCAAGAACAGCGCUGGGUUCAUAAAGA
((((((((..(((.((((........)))).))).))))))))..................................................................... ( -7.82 = -10.08 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:10 2006