| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,221,147 – 7,221,249 |
| Length | 102 |
| Max. P | 0.849019 |
| Location | 7,221,147 – 7,221,249 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 91.22 |
| Mean single sequence MFE | -15.13 |
| Consensus MFE | -14.92 |
| Energy contribution | -14.70 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7221147 102 - 22224390 CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUUUUGUAUUUUUUUUUUUUGCCUGGCGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC ..........(((((.......................................))))).(((.....)))....((((.((((.....)))).)))).... ( -15.33) >DroSec_CAF1 28824 92 - 1 CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUU----------UUUUUUUGCCUGGUGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC .....(((((.........(((.(((.......----------..........))).))).......)))))...((((.((((.....)))).)))).... ( -14.32) >DroSim_CAF1 29234 90 - 1 CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUU------------UUUUUGCCUGGCGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC ..........(((((..................------------.........))))).(((.....)))....((((.((((.....)))).)))).... ( -15.73) >consensus CUAUUUUCCACCGCCUCCUCCCCCCAUAUUUUU__________UUUUUUUGCCUGGCGGGUCCAAAUUGGAACUUGAAUUUCAUUUCGAAUGACAUUCGCUC ..........(((((.......................................))))).(((.....)))....((((.((((.....)))).)))).... (-14.92 = -14.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:09 2006