| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,219,759 – 7,219,853 |
| Length | 94 |
| Max. P | 0.653621 |
| Location | 7,219,759 – 7,219,853 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 83.34 |
| Mean single sequence MFE | -22.09 |
| Consensus MFE | -14.62 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7219759 94 - 22224390 CUGACCAAA--AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCUGUGUCCCUU------GUGUCCUUUUUU--------- ......(((--(((((((((.(..(((((((.....((((.....))))....(((.....)))))))).......))..)..)------))))))))))).--------- ( -21.51) >DroSec_CAF1 27475 93 - 1 CAGACCAAA--AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCGUGUCCCUU------GUGUCCUUUUU---------- ......(((--(((((((((.(..(((((.......((((.....))))....(((.....))).........)))))..)..)------)))))))))))---------- ( -22.90) >DroSim_CAF1 27859 95 - 1 CUGACCAAA--AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCGUGUCCCUU------GUGUCCUUUUUUU-------- ......(((--(((((((((.(..(((((.......((((.....))))....(((.....))).........)))))..)..)------)))))))))))..-------- ( -23.00) >DroEre_CAF1 29445 90 - 1 CUGGACCAA--AAGGACAUGUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCAUGUCCCUC------GUGUCCUU------------- ..((((...--..(((((((.(....(((((.....((((.....))))....(((.....))))))))...).)))))))...------..))))..------------- ( -25.00) >DroYak_CAF1 31023 105 - 1 CUGUACCAAAAAAGGACAUAUGUUCACGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCACGUGUCCCUC------GUGUCCUUUUUUCCUUGCCUU ..(((..((((((((((((..(..(((((((.....((((.....))))....(((.....))))))).......)))..)...------))))))))))))...)))... ( -22.31) >DroAna_CAF1 29385 96 - 1 CUGUCUUUAGCCCGAACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCUUGUGUCCUUUUUCCCGGCGUCC--------------- .........(((.((((....)))).(((((.....((((.....))))....(((.....))))))))....................)))....--------------- ( -17.80) >consensus CUGACCAAA__AAGGACAUAUGUUCAUGGUCAAAUCGAUUAAAUAAAUCAUUAGCAUCUUUUGUGGCCAAUUCCCGUGUCCCUU______GUGUCCUUUUU__________ .............((((((.......(((((.....((((.....))))....(((.....))))))))......)))))).............................. (-14.62 = -14.82 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:08 2006