Locus 2691

Sequence ID X_DroMel_CAF1
Location 7,214,751 – 7,214,851
Length 100
Max. P 0.656239
window4407 window4408

overview

Window 7

Location 7,214,751 – 7,214,851
Length 100
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 81.75
Mean single sequence MFE -21.79
Consensus MFE -15.02
Energy contribution -15.67
Covariance contribution 0.64
Combinations/Pair 1.16
Mean z-score -1.55
Structure conservation index 0.69
SVM decision value 0.16
SVM RNA-class probability 0.614147
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7214751 100 + 22224390
UGAAAGUGCUA-CCCUGGACCACUAAAAUAGUCCCCACGCCCC-----------------AACAGAAAUGAUAAUACAUUAUCAGGCCGGAGCAUUAAUGAGCUGAAGCUCAAACGCA
....((((((.-((..((((..........))))....(((..-----------------........((((((....))))))))).))))))))..(((((....)))))...... ( -23.30)
>DroPse_CAF1 33732 111 + 1
UGAGAGUACUAUCCCUGGCAUACUAAAAUCCCCCCCACUGCUAAAAACGACGC-------CCCAGAAAUGAUAAUACAUUAUCAAGCCCAAGCAUUAAUGAGCUGAAGCUCAAACACA
...((((.........(((..................(((.............-------..)))...((((((....)))))).)))..(((........)))...))))....... ( -14.16)
>DroSec_CAF1 22503 100 + 1
UGAAAGUGCUU-CCCUGGACCACUAAAAUAGUCCCCACGCCCC-----------------AACAGAAAUGAUAAUACAUUAUCAGGCCGGAGCAUUAAUGAGCUGAAGCUCAAACGCA
....(((((((-(...((((..........))))....(((..-----------------........((((((....))))))))).))))))))..(((((....)))))...... ( -24.20)
>DroEre_CAF1 24375 100 + 1
UGAAAGUGCUA-CCCUGGACCACUAAAACAGUCCCCAUGCCCC-----------------AACUGAAAUGAUAAUACAUUAUCAGGCCGGAGCAUUAAUGAGCUGAAGCUCAAACGCA
....((((((.-..((((.((.......((((...........-----------------.))))...((((((....))))))))))))))))))..(((((....)))))...... ( -24.70)
>DroYak_CAF1 25363 115 + 1
UGAAAGUGCUA-CCCUGGACCACUAAAAUAGUCCCCACGCCCC--CCCAACCCCCCAAAAAACUGAAAUGAUAAUACAUUAUCAGGCCGGAGCAUUAAUGAGCUGAAGCUCAAACGCA
....((((((.-((..((((..........))))....(((..--..........((......))...((((((....))))))))).))))))))..(((((....)))))...... ( -24.30)
>DroAna_CAF1 24017 100 + 1
CGAAAGUGCUA-CCCUGGACCACUGAGAACUCACCCAUGCCCC-----------------GACACAAAUGAUAAUACAUUAUCAAGCCCGGGCAUUAAUGAGCUGGAGCUCAAACACA
.....(((...-.(((((.....(((....)))..........-----------------........((((((....))))))...)))))......(((((....)))))..))). ( -20.10)
>consensus
UGAAAGUGCUA_CCCUGGACCACUAAAAUAGUCCCCACGCCCC_________________AACAGAAAUGAUAAUACAUUAUCAGGCCGGAGCAUUAAUGAGCUGAAGCUCAAACGCA
....((((((....((((.((.........((......))............................((((((....))))))))))))))))))..(((((....)))))...... (-15.02 = -15.67 +   0.64)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 8

Location 7,214,751 – 7,214,851
Length 100
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.75
Mean single sequence MFE -34.13
Consensus MFE -20.08
Energy contribution -20.09
Covariance contribution 0.01
Combinations/Pair 1.30
Mean z-score -2.18
Structure conservation index 0.59
SVM decision value 0.26
SVM RNA-class probability 0.656239
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7214751 100 - 22224390
UGCGUUUGAGCUUCAGCUCAUUAAUGCUCCGGCCUGAUAAUGUAUUAUCAUUUCUGUU-----------------GGGGCGUGGGGACUAUUUUAGUGGUCCAGGG-UAGCACUUUCA
(((...(((((....)))))...((((((((((..((.((((......)))))).)))-----------------)))))))..(((((((....)))))))....-..)))...... ( -34.30)
>DroPse_CAF1 33732 111 - 1
UGUGUUUGAGCUUCAGCUCAUUAAUGCUUGGGCUUGAUAAUGUAUUAUCAUUUCUGGG-------GCGUCGUUUUUAGCAGUGGGGGGGAUUUUAGUAUGCCAGGGAUAGUACUCUCA
.....(..((((..(((........)))..))))..)....((((((((...(((((.-------(((((.((((((....)))))).)))....))...)))))))))))))..... ( -27.00)
>DroSec_CAF1 22503 100 - 1
UGCGUUUGAGCUUCAGCUCAUUAAUGCUCCGGCCUGAUAAUGUAUUAUCAUUUCUGUU-----------------GGGGCGUGGGGACUAUUUUAGUGGUCCAGGG-AAGCACUUUCA
(((...(((((....)))))...((((((((((..((.((((......)))))).)))-----------------)))))))..(((((((....)))))))....-..)))...... ( -34.30)
>DroEre_CAF1 24375 100 - 1
UGCGUUUGAGCUUCAGCUCAUUAAUGCUCCGGCCUGAUAAUGUAUUAUCAUUUCAGUU-----------------GGGGCAUGGGGACUGUUUUAGUGGUCCAGGG-UAGCACUUUCA
(((...(((((....)))))...((((((((((.(((.((((......))))))))))-----------------)))))))..((((..(....)..))))....-..)))...... ( -35.00)
>DroYak_CAF1 25363 115 - 1
UGCGUUUGAGCUUCAGCUCAUUAAUGCUCCGGCCUGAUAAUGUAUUAUCAUUUCAGUUUUUUGGGGGGUUGGG--GGGGCGUGGGGACUAUUUUAGUGGUCCAGGG-UAGCACUUUCA
.((((((((((....)))))..))))).((((((((((((....))))))(..(((....)))..)))))))(--..((.((..(((((((....)))))))....-..)).))..). ( -39.40)
>DroAna_CAF1 24017 100 - 1
UGUGUUUGAGCUCCAGCUCAUUAAUGCCCGGGCUUGAUAAUGUAUUAUCAUUUGUGUC-----------------GGGGCAUGGGUGAGUUCUCAGUGGUCCAGGG-UAGCACUUUCG
.((((.(((((....)))))....((((((((((......((.....(((((..(((.-----------------...)))..))))).....))..))))).)))-))))))..... ( -34.80)
>consensus
UGCGUUUGAGCUUCAGCUCAUUAAUGCUCCGGCCUGAUAAUGUAUUAUCAUUUCUGUU_________________GGGGCGUGGGGACUAUUUUAGUGGUCCAGGG_UAGCACUUUCA
(((...(((((....)))))...(((((((((..((((((....))))))..)).....................)))))))..(((((((....))))))).......)))...... (-20.08 = -20.09 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:04 2006