Locus 2688

Sequence ID X_DroMel_CAF1
Location 7,207,827 – 7,207,940
Length 113
Max. P 0.621557
window4403

overview

Window 3

Location 7,207,827 – 7,207,940
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.55
Mean single sequence MFE -26.35
Consensus MFE -22.84
Energy contribution -22.73
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.44
Structure conservation index 0.87
SVM decision value 0.18
SVM RNA-class probability 0.621557
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7207827 113 - 22224390
GCU--UCCA-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG
...--.((.-----((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))))......... ( -25.00)
>DroPse_CAF1 20991 118 - 1
UCC--UCCAGCCAGCCGACUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG
..(--(((((((((....)))))).....((((((......))))))((((((((((..(((....)))........((((....))))....)))).))))))...))))......... ( -31.00)
>DroSim_CAF1 16072 113 - 1
GCU--UCCA-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG
...--.((.-----((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))))......... ( -25.00)
>DroEre_CAF1 17102 113 - 1
GCU--UCCG-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAACGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG
(((--.((.-----..))..)))...........((((((((..((.((((((((((..(((....)))........((((....))))....)))).))))))..))...)))))))). ( -25.00)
>DroYak_CAF1 18149 113 - 1
GCU--UCCA-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG
...--.((.-----((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))))......... ( -25.00)
>DroAna_CAF1 17789 115 - 1
GCCUCUUCU-----CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG
(((((....-----...(((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))...)))))........ ( -27.10)
>consensus
GCU__UCCA_____CUGGCUGGCUAUAAAACUUUUAUAGUAAAAAGUAAAUGCCACAAAUGAGCAAUCGAAAAUUUCGCAUUAUAAUGCAAACUGUGUGCAUUUUUCGGGGUUAUUGUAG
..............((((((.(((((((.....)))))))....)))((((((((((..(((....)))........((((....))))....)))).))))))..)))........... (-22.84 = -22.73 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:00 2006