Locus 2686

Sequence ID X_DroMel_CAF1
Location 7,206,017 – 7,206,130
Length 113
Max. P 0.891823
window4401

overview

Window 1

Location 7,206,017 – 7,206,130
Length 113
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 81.27
Mean single sequence MFE -38.62
Consensus MFE -19.06
Energy contribution -21.50
Covariance contribution 2.44
Combinations/Pair 1.16
Mean z-score -3.19
Structure conservation index 0.49
SVM decision value 0.97
SVM RNA-class probability 0.891823
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7206017 113 - 22224390
UUUGAGUAUAUUUACUCUGCGAUACC-CCUUUCUUCGUUUGCGAGCCUCUGGUUAUUAUCAUUACGAUGAUGACGAACGCAUGAUGCUCAUUAGAGA--GGGGGGUACACA-AAAAA
...(((((....)))))((.(.((((-((((((((.(....)((((.(((((((.(((((((....)))))))..))).)).)).))))....))))--))))))))).))-..... ( -37.30)
>DroSec_CAF1 13879 113 - 1
UUUGGGUAUAUUUUCUCAGUGGAACC-CCUUUCUUCGUUUGCGAGCCUCUGGUUAUUAUCAUUAUGAUGAUGACGAACGCAUGAUGCUCAUUAGAGA--GGGGAGUCCACA-AAAAA
..((((........))))(((((.((-(((((((..(....)((((.(((((((((((((.....))))))))).....)).)).))))...)))))--))))..))))).-..... ( -39.00)
>DroEre_CAF1 15109 111 - 1
-----AUAUAUCUGCUCUGUGGAACCCCUUUUCUUCUUCCUCGAGCCCCUGGCUUUGAUCAUUAUGAUGACGACGAACGCAUGAUGCUCAUUAGAGAGAGGGGGGUCUCCA-GAAAC
-----..........((((..((.(((((((((((.......(((((...)))))(((.(((((((.((........))))))))).)))...))))))))))).))..))-))... ( -37.80)
>DroYak_CAF1 16098 115 - 1
UUUGAGCAUAUGUGCUGUGUGGUACC-CUUUUCUUCUUCGGCGAGCCUCUGGUCAUUAUCAUUACGAUGAUGACGAACGCAUGAUGCUCAUUAGAGAGGG-GGGGUCUGCAAAAAAA
....((((....)))).((..(.(((-((..(((((((..(.((((.(((((((((((((.....))))))))).....)).)).)))).)..)))))))-))))))..))...... ( -40.40)
>consensus
UUUGAGUAUAUUUGCUCUGUGGAACC_CCUUUCUUCGUCUGCGAGCCUCUGGUUAUUAUCAUUACGAUGAUGACGAACGCAUGAUGCUCAUUAGAGA__GGGGGGUCCACA_AAAAA
..................((((.(((.((((((((.......((((.(((((((((((((.....))))))))).....)).)).))))......)))))))))))))))....... (-19.06 = -21.50 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:58 2006