Locus 2685

Sequence ID X_DroMel_CAF1
Location 7,202,350 – 7,202,453
Length 103
Max. P 0.889784
window4399 window4400

overview

Window 9

Location 7,202,350 – 7,202,453
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 91.28
Mean single sequence MFE -15.63
Consensus MFE -13.77
Energy contribution -13.77
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.88
SVM decision value 0.96
SVM RNA-class probability 0.889784
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7202350 103 + 22224390
CAACAACAAUAAAAAAAAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCUGUCAAAAAUUUUA
.......................((((((((....(((...(((((....)))))...)))....(....)))))))))(((....))).............. ( -14.60)
>DroSec_CAF1 10233 92 + 1
CAACA-----------AAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCAGUCAAAAAUUUUG
...((-----------(((....((((((((....(((...(((((....)))))...)))....(....)))))))))(((....))).........))))) ( -16.40)
>DroSim_CAF1 10361 92 + 1
CAACA-----------AAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCUGUCAAAAAUUUUG
...((-----------(((....((((((((....(((...(((((....)))))...)))....(....)))))))))(((....))).........))))) ( -15.90)
>consensus
CAACA___________AAAACCAAUGAAAAUGAACCAAAAUGAAAUGAAAAUUUUCUGUUGACACCGAAAGAUUUUCAUGGCAAAUGCCUGUCAAAAAUUUUG
.......................((((((((....(((...((((.......))))..)))....(....)))))))))(((....))).............. (-13.77 = -13.77 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 7,202,350 – 7,202,453
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 91.28
Mean single sequence MFE -16.70
Consensus MFE -16.63
Energy contribution -16.63
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 1.00
SVM decision value 0.07
SVM RNA-class probability 0.567268
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7202350 103 - 22224390
UAAAAUUUUUGACAGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUUUUUUUUAUUGUUGUUG
.((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))................ ( -16.70)
>DroSec_CAF1 10233 92 - 1
CAAAAUUUUUGACUGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUU-----------UGUUG
.((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))-----------..... ( -16.60)
>DroSim_CAF1 10361 92 - 1
CAAAAUUUUUGACAGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUU-----------UGUUG
.((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))-----------..... ( -16.80)
>consensus
CAAAAUUUUUGACAGGCAUUUGCCAUGAAAAUCUUUCGGUGUCAACAGAAAAUUUUCAUUUCAUUUUGGUUCAUUUUCAUUGGUUUU___________UGUUG
.((((((..(((..(((....)))((((((((.((((.((....)).)))))))))))).................)))..))))))................ (-16.63 = -16.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:57 2006