Locus 2683

Sequence ID X_DroMel_CAF1
Location 7,196,779 – 7,196,876
Length 97
Max. P 0.522973
window4395

overview

Window 5

Location 7,196,779 – 7,196,876
Length 97
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 86.47
Mean single sequence MFE -26.68
Consensus MFE -22.97
Energy contribution -23.00
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.45
Structure conservation index 0.86
SVM decision value -0.02
SVM RNA-class probability 0.522973
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7196779 97 + 22224390
GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC----------------------
(((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).................))..)))...---------------------- ( -24.10)
>DroSec_CAF1 4518 97 + 1
GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC----------------------
(((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).................))..)))...---------------------- ( -24.10)
>DroSim_CAF1 4626 97 + 1
GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC----------------------
(((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).................))..)))...---------------------- ( -24.10)
>DroEre_CAF1 4289 119 + 1
GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACACACCACCCAACCGCCACCCCUUGGC
((((...(((((((((((......)))))).....)))))..((((((((((.......)))))).))))................................))))((((.....)))) ( -28.10)
>DroYak_CAF1 4553 113 + 1
GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACACACCAUACACCACCCACCC------
(((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).))))...........................))...)))........------ ( -24.30)
>DroAna_CAF1 7293 100 + 1
GGC-UUGGUCAUCGUCAUCUCUCGGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGUAUAAUAAUUUUACACAUACUCCCGAG----------CCAU--------
(((-(((((((((((((((....))))))).....))))).(((((((((((.......)))))).)))))......................))))----------))..-------- ( -35.40)
>consensus
GGUUUUGGUCAUCGUCAUCUCUCCGUGGCGUACAAAUGACGGCUUCCGCUUGUGCAUAUUAAGCGUGAAGGAUAAUAAUUUUACACACACCACCCAC______________________
(((..(((((((((((((......)))))).....)))))..((((((((((.......)))))).)))).............))...)))............................ (-22.97 = -23.00 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:53 2006