Locus 2680

Sequence ID	X_DroMel_CAF1
Location	7,187,032 – 7,187,122
Length	90
Max. P	0.939753

overview

Window 1

Location	7,187,032 – 7,187,122
Length	90
Sequences	3
Columns	90
Reading direction	forward
Mean pairwise identity	97.04
Mean single sequence MFE	-13.53
Consensus MFE	-13.40
Energy contribution	-13.40
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-2.13
Structure conservation index	0.99
SVM decision value	1.28
SVM RNA-class probability	0.939753
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7187032 90 + 22224390
CUGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAAAAAAUCCUUACUACAAUCAAG
.......(((..(((((((((...))))(((.((((............)))).)))..)))))..)))...................... ( -13.40)
>DroSec_CAF1 6182 90 + 1
CUGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAAAAAAUCCUUACUACAAUCAAG
.......(((..(((((((((...))))(((.((((............)))).)))..)))))..)))...................... ( -13.40)
>DroEre_CAF1 4007 87 + 1
CCGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAA---AUCCUUACUACAAUCAAG
..(((..(((..(((((((((...))))(((.((((............)))).)))..)))))..))).---)))............... ( -13.80)
>consensus
CUGAUCAUUGACGGGUUGCAGUCACUGCUGUAGAUUACAAUACAACCAAAUCAACAAUAACCCAACAAAAAAAUCCUUACUACAAUCAAG
.......(((..(((((((((...))))(((.((((............)))).)))..)))))..)))...................... (-13.40 = -13.40 +   0.00)

alignment

secondary structure

dotplot

Window 2

Location	7,187,032 – 7,187,122
Length	90
Sequences	3
Columns	90
Reading direction	reverse
Mean pairwise identity	97.04
Mean single sequence MFE	-21.70
Consensus MFE	-21.69
Energy contribution	-21.47
Covariance contribution	-0.22
Combinations/Pair	1.04
Mean z-score	-1.53
Structure conservation index	1.00
SVM decision value	0.33
SVM RNA-class probability	0.691326
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7187032 90 - 22224390
CUUGAUUGUAGUAAGGAUUUUUUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCAG
..((((..(.(...((........(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). ( -21.70)
>DroSec_CAF1 6182 90 - 1
CUUGAUUGUAGUAAGGAUUUUUUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCAG
..((((..(.(...((........(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). ( -21.70)
>DroEre_CAF1 4007 87 - 1
CUUGAUUGUAGUAAGGAU---UUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCGG
..((((..(.(...((..---...(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). ( -21.70)
>consensus
CUUGAUUGUAGUAAGGAUUUUUUUGUUGGGUUAUUGUUGAUUUGGUUGUAUUGUAAUCUACAGCAGUGACUGCAACCCGUCAAUGAUCAG
..((((..(.(...((........(((((((((((((((....(((((.....)))))..))))))))))).))))))..).)..)))). (-21.69 = -21.47 +  -0.22)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:50 2006