Locus 268

Sequence ID X_DroMel_CAF1
Location 906,353 – 906,447
Length 94
Max. P 0.882758
window410

overview

Window 0

Location 906,353 – 906,447
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 96.44
Mean single sequence MFE -26.43
Consensus MFE -24.93
Energy contribution -25.27
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.94
SVM decision value 0.92
SVM RNA-class probability 0.882758
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 906353 94 - 22224390
GGUAAUACAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUCGAAGGUUUCUUUUGCAAUGCAAUGACGUCAAAAUCAUGCAGAAAUGUGCU
.........(((..(..((((..((((.((((((((..........)))))))).))))...))))..).)))........(((....)))... ( -24.70)
>DroSec_CAF1 21274 93 - 1
GGUAAUAAAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUUGAAGGUUUCUUUUGC-GUGCAAUGAUGUCAAAAUCAUGCAGAAAUGUGCU
(((((((((....))))))))).((((.((((((((..........)))))))).))))-..((.(((((......)))))(((....))))). ( -27.30)
>DroSim_CAF1 19988 93 - 1
GGUAAUAAAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUCGAAGGUUUCUUUUGC-GUGCAAUGAUGUCAAAAUCAUGCAGAAAUGUGCU
(((((((((....))))))))).((((.((((((((..........)))))))).))))-..((.(((((......)))))(((....))))). ( -27.30)
>consensus
GGUAAUAAAGAUAUUUGUUGCUGGCAGCAGGAGCCUAAGCAUUCGAAGGUUUCUUUUGC_GUGCAAUGAUGUCAAAAUCAUGCAGAAAUGUGCU
.........((((.(..((((..((((.((((((((..........)))))))).))))...))))..)))))........(((....)))... (-24.93 = -25.27 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:27 2006