Locus 2677

Sequence ID X_DroMel_CAF1
Location 7,178,849 – 7,178,954
Length 105
Max. P 0.529505
window4385

overview

Window 5

Location 7,178,849 – 7,178,954
Length 105
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 74.48
Mean single sequence MFE -18.92
Consensus MFE -6.66
Energy contribution -8.30
Covariance contribution 1.64
Combinations/Pair 1.08
Mean z-score -1.72
Structure conservation index 0.35
SVM decision value -0.01
SVM RNA-class probability 0.529505
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7178849 105 + 22224390
UUAUCAGCCAUUAUAAGCAGGUCGC---UGAUAAGGCGACCGUCAGAUGUAAUUUAAUUAAUUACACGACAAAAAAUACAUUUAAACAAAAACUAUACGAUUACAAAU
..(((.((........)).((((((---(.....)))))))(((.(.(((((((.....)))))))))))............................)))....... ( -21.20)
>DroSec_CAF1 4430 106 + 1
UUAUCAGCCAUUAUAAGCAGGUCGCUGCUGAUAAGGCGACCGUCAGAUGUAAUUUAAUUAAUUACACGACAAAAAAUACAUUUAAACU--AACUGAACGAUUACAAAU
...((((............(((((((........)))))))(((.(.(((((((.....)))))))))))..................--..))))............ ( -23.70)
>DroEre_CAF1 6022 102 + 1
UUAUCAGCCAUUA-AAGCAGGUCGC---UGAUAAGGCGGCCGUCAGAUGUAAUUUAAUAAAUUACACGAAAAGAAAUAACUUUCAAGC--AACUAAACGCUUGCUAAU
.............-.(((.((((((---(.....)))))))......(((((((.....)))))))......((((....))))((((--........)))))))... ( -21.70)
>DroYak_CAF1 7044 103 + 1
UUAUCAGCCAUUAUAAGCAGGUCGC---UGAUAAGGCGGCCGUCAGAUGUAAUUUAAUUAAUUACACGUAAAAAAAUGCAUUAUAACA--AACAAAACUAUUACUAUU
..........(((((((((((((((---(.....)))))))......(((((((.....)))))))..........))).))))))..--.................. ( -21.90)
>DroAna_CAF1 10914 81 + 1
UUAUCAAGUCUAAUAAGCAGGUCGC---UGAUAAG----------CAUAUAAUUCAAUUUAGUACACUUAGAGAAG-AGUUUUCA-UC--AA-----CGGUUG-----
((((((.(.((........)).)..---)))))).----------.....(((((..(((((.....)))))...)-))))....-..--..-----......----- (  -6.10)
>consensus
UUAUCAGCCAUUAUAAGCAGGUCGC___UGAUAAGGCGACCGUCAGAUGUAAUUUAAUUAAUUACACGAAAAAAAAUACAUUUAAACA__AACUAAACGAUUACAAAU
...................((((((..........))))))......(((((((.....))))))).......................................... ( -6.66 =  -8.30 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:44 2006