Locus 2673

Sequence ID X_DroMel_CAF1
Location 7,160,645 – 7,160,765
Length 120
Max. P 0.615813
window4376

overview

Window 6

Location 7,160,645 – 7,160,765
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.55
Mean single sequence MFE -17.07
Consensus MFE -11.83
Energy contribution -13.17
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.69
SVM decision value 0.17
SVM RNA-class probability 0.615813
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7160645 120 - 22224390
GAAAUUUGCUCGGACGACCAAAUUUGUUGUUUAUCUAAAAAACCAAAAUAGAAAUACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUACCAAGUUGAUCCGUGGAAAAAUA
....(((.(.((((((((....((((((((((.......))))...))))))........(((((((((.....)))))).))).................)))).)))).).))).... ( -18.80)
>DroSec_CAF1 28339 96 - 1
-----------------------UUUUUGUUUGUCUAAA-AACCAAAAUAGAAACACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUUCCAAGUUGAUCCUUGGAAAAAUA
-----------------------.........((((...-........(((.....))).(((((((((.....)))))).))).......))))(((((((......)))))))..... ( -17.60)
>DroSim_CAF1 22627 96 - 1
-----------------------UUUUUGUUUGUCUAAA-ACCCAAAAUAGAAAUACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUUCCAAAUUGAUCCUUGGAAAAAUA
-----------------------.........((((...-........(((.....))).(((((((((.....)))))).))).......))))((((((........))))))..... ( -14.80)
>consensus
_______________________UUUUUGUUUGUCUAAA_AACCAAAAUAGAAAUACUAAGGCAAUUUACAAAUUAAAUUAGCCGCAUUAAAGACUUCCAAGUUGAUCCUUGGAAAAAUA
................................((((............(((.....))).(((((((((.....)))))).))).......))))(((((((......)))))))..... (-11.83 = -13.17 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:36 2006