Locus 2672

Sequence ID X_DroMel_CAF1
Location 7,155,895 – 7,155,989
Length 94
Max. P 0.994506
window4375

overview

Window 5

Location 7,155,895 – 7,155,989
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 96.33
Mean single sequence MFE -24.13
Consensus MFE -22.18
Energy contribution -22.02
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.90
Structure conservation index 0.92
SVM decision value 2.49
SVM RNA-class probability 0.994506
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7155895 94 - 22224390
AGGGCUAAAA--AAAACGUUAUUAAGCUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU
.(((((....--.....(((....))).......((((((((....)))...)))))))))).....(..(((..............)))..)... ( -24.24)
>DroSec_CAF1 23652 95 - 1
AGGGCUAAAA-AAAAACGUUUGUAAGUUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU
.(((((....-..((((........)))).....((((((((....)))...)))))))))).....(..(((..............)))..)... ( -25.84)
>DroSim_CAF1 18035 96 - 1
AGGGCUAAAAAAAAAACGUUUUUAAGCUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU
.(((((...........(((....))).......((((((((....)))...)))))))))).....(..(((..............)))..)... ( -24.04)
>DroEre_CAF1 24468 94 - 1
AGGGCUAAAA-AAAAACGUU-UUAAGCUUAAAUAUGGCUUAGAGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU
.(((((....-.......((-(((((((.......))))))))).............))))).....(..(((..............)))..)... ( -22.29)
>DroYak_CAF1 24116 95 - 1
AGGGCUAAAA-AAAAAGGUUUUUAAGCUUAAAUAUGGCUUAGGGUACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU
.(((((....-....(((((....))))).....((((((((....)))...)))))))))).....(..(((..............)))..)... ( -24.24)
>consensus
AGGGCUAAAA_AAAAACGUUUUUAAGCUUAAAUAUGGCUUAGGGAACUAAAAGGCCAGGCCCAGUGACUGCCAUUAUAACAUCCGAUUGGUGGGAU
.(((((...........(((....))).......((((((((....)))...)))))))))).....(..(((..............)))..)... (-22.18 = -22.02 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:35 2006