Locus 2670

Sequence ID X_DroMel_CAF1
Location 7,154,098 – 7,154,202
Length 104
Max. P 0.996697
window4372

overview

Window 2

Location 7,154,098 – 7,154,202
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 96.54
Mean single sequence MFE -39.41
Consensus MFE -35.38
Energy contribution -36.42
Covariance contribution 1.04
Combinations/Pair 1.03
Mean z-score -2.16
Structure conservation index 0.90
SVM decision value 2.73
SVM RNA-class probability 0.996697
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7154098 104 + 22224390
CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCAUCACGCCGCCGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA
.(((((((...((((....((((((.((....)).))))))(((.....)))..)))).....))))))).(((((((...(((.......)))..))))))). ( -41.10)
>DroSec_CAF1 21873 104 + 1
CCGGCGGUCAAGGUAUUCCAUCAGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCAUCAUGCCGCGGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA
..((((((...((....))....(.(((.(((.(((((((....)).((.((((.......)))).)))))))))).))).)...........))))))..... ( -34.90)
>DroSim_CAF1 16283 104 + 1
CCGGCGGUCAAGGUGUUCCAUCCGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCACCAUGCCGCGGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA
(((.(((.((.((((........((.((....)).))(((((((.....))))))).)))).)))))))).(((((((...(((.......)))..))))))). ( -38.70)
>DroEre_CAF1 22645 104 + 1
CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCAUCAGUUGCAUCACCAUCAUGCCGCCGCGGUGGGGCAUCAUCAUCAUCACGCCGCCCACCA
.(((((((...((((....((((((.((....)).))))))(((.....)))..)))).....))))))).((((((((..............))..)))))). ( -40.34)
>DroYak_CAF1 22276 104 + 1
CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCAUCAGUUGCAUCACCAUCAUGCCGCCGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA
.(((((((...((((....((((((.((....)).))))))(((.....)))..)))).....))))))).(((((((...(((.......)))..))))))). ( -42.00)
>consensus
CCGGCGGUCAAGGUGUUCCAUCAGCUGAGCCAUCCGCUGGUGCACCAGUUGCAUCACCAUCAUGCCGCCGCGGUGGGUCAUCAUCAUCAUCAUGCCGCCCACCA
.((((((.((.((((........((.((....)).))(((((((.....))))))).)))).)))))))).(((((((...(((.......)))..))))))). (-35.38 = -36.42 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:33 2006