Locus 267

Sequence ID X_DroMel_CAF1
Location 905,081 – 905,176
Length 95
Max. P 0.542837
window409

overview

Window 9

Location 905,081 – 905,176
Length 95
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.12
Mean single sequence MFE -23.67
Consensus MFE -18.77
Energy contribution -17.38
Covariance contribution -1.39
Combinations/Pair 1.33
Mean z-score -0.84
Structure conservation index 0.79
SVM decision value 0.02
SVM RNA-class probability 0.542837
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 905081 95 + 22224390
AAUCGGGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGAUAAAAAAAUCAUCGAC-AC--------------------
..(((..((((((((((((.....)))))))))(((....))).....)))...)))..............((.((((.........))))))-..-------------------- ( -24.80)
>DroPse_CAF1 31507 115 + 1
AAUGGUAGUUGUAGUGGGUGGAUGGCCCACUGUGCGAACCUGCGGAAAUUCAAACGGAAUCAAAGCGAAAAGUUCGACAAA-AAAUCAUCGAGCACUAAAAAAAUAAGAAUCGACU
......(((((.(((((((.....)))))))((((((((.(((....((((.....))))....)))....))))((....-...)).....))))...............))))) ( -24.80)
>DroSec_CAF1 20014 94 + 1
AAUUGAGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGGUAAA-AAAUCAUCGAC-AC--------------------
..(((((...(((((((((.....)))))))))(((....))).....)))))..................((.((((...-.....))))))-..-------------------- ( -24.20)
>DroSim_CAF1 18907 94 + 1
AAUUGAGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGGUAAA-AAAUCAUCGAC-AC--------------------
..(((((...(((((((((.....)))))))))(((....))).....)))))..................((.((((...-.....))))))-..-------------------- ( -24.20)
>DroEre_CAF1 14058 94 + 1
AAACGAGGAGGCGACGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGGUAAA-AAAUCAUCGAC-AC--------------------
...(((((..(((.(((((.....)))))...)))...))(((.(((......((.........))......))).)))..-......)))..-..-------------------- ( -19.20)
>DroPer_CAF1 32188 115 + 1
AAUGGUAGUUGUAGUGGGUGGAUGGCCCACUGUGCGAACCUGCGGAAAUUCAAACGGAAUCAAAGCGAAAAGUUCGACAAA-AAAUCAUCGAGCACUAAAAAAAUAAGAAUCGACU
......(((((.(((((((.....)))))))((((((((.(((....((((.....))))....)))....))))((....-...)).....))))...............))))) ( -24.80)
>consensus
AAUCGAGGAGGCGGCGGGCAGAGCGCCUGCUGUGCAGACCUGCGGAAAUUCAAACGGAAUCAAAGUGAAAAGUUCGAUAAA_AAAUCAUCGAC_AC____________________
..........(((((((((.....)))))))))(((....)))...........((((.((.....))....))))........................................ (-18.77 = -17.38 +  -1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:26 2006