Locus 2665

Sequence ID X_DroMel_CAF1
Location 7,146,140 – 7,146,241
Length 101
Max. P 0.967289
window4363

overview

Window 3

Location 7,146,140 – 7,146,241
Length 101
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 93.85
Mean single sequence MFE -37.60
Consensus MFE -35.30
Energy contribution -35.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.59
Structure conservation index 0.94
SVM decision value 1.61
SVM RNA-class probability 0.967289
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7146140 101 + 22224390
ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAG---AAGAAGCGACCGAAGAGGAGCCAAAGAAGCCGAAGCAGCGUCAGAAUGCAU
...((((.(((((((((..((((((((......))))))))(....)...---..)))))..((.....)).)))).....)))).....((((....)))).. ( -38.10)
>DroSim_CAF1 8261 104 + 1
ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAGAAGAAGAAGCGACCGAAGAGGAGCCAAAGAAGCCGAAGCAGCGCCAGAAUGCAA
...((((.(((((((((..((((((((......))))))))(....)........)))))..((.....)).)))).....))))..(((.........))).. ( -37.50)
>DroEre_CAF1 14367 101 + 1
ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAG---AAGAAGCGGCAGAAGAGGAGCCAAAGAAGCCGGAGCAGCGGCACAAUGCAA
...((((.((((.((((.(((((((((((.......)))))(....)...---.....))))))...)))).)))).....)))).....(((......))).. ( -37.20)
>consensus
ACACGGUGUGGCGCUUUAUGCUGCGCUGCUUGGGGCGCAGCCGAAAGAAG___AAGAAGCGACCGAAGAGGAGCCAAAGAAGCCGAAGCAGCGCCAGAAUGCAA
...((((.(((((((((..((((((((......))))))))(....)........)))))..((.....)).)))).....))))..(((.........))).. (-35.30 = -35.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:25 2006