| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,143,642 – 7,143,736 |
| Length | 94 |
| Max. P | 0.646242 |
| Location | 7,143,642 – 7,143,736 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.51 |
| Mean single sequence MFE | -15.66 |
| Consensus MFE | -10.95 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646242 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7143642 94 - 22224390 CAUGAGGGGAAGUUCUUUCACUUUCACUCGCUUUUGCAUUUCCACAUU---CCCCACUGCACUACCCUCAGUUCAAACUUCCCACUUGGAUCAGCAA ...(((((((((((...............((....))...........---......((.(((......))).)))))))))).))).......... ( -16.10) >DroSec_CAF1 11439 85 - 1 UAUGAGGGGAAGUUCUUUCACUUUCACUCGCUUUUGCAUUUCCACAUU---CCCCAUUGG---------AGUUCAAACUUCCCACUUGGAUCAGCAA ...(((((((((((...............((....))........(((---((.....))---------)))...)))))))).))).......... ( -18.30) >DroSim_CAF1 5801 88 - 1 UAUGAGGGGAAGUUCUUUCACUUUCACUCGCUUUUGCAUUUCCACAUUCUUCCCCACUGC---------AGUUCAAACUUCCCACUUGGAUCAGCAA .....(((((((............((........))............)))))))..(((---------.((((((.........))))))..))). ( -15.45) >DroYak_CAF1 11534 92 - 1 UGUGAGGGGAAGUUCUUUCACUUUCACUCGCUUUUGCAUUUCCACAUU---CAACAUUCCCCACUCCCCACU--GCACCUCCCACUUUGAUCAGCAA ((.((((((((((......))))))....((....))...........---.....................--...)))).))............. ( -12.80) >consensus UAUGAGGGGAAGUUCUUUCACUUUCACUCGCUUUUGCAUUUCCACAUU___CCCCACUGC_________AGUUCAAACUUCCCACUUGGAUCAGCAA ...(((.((((((......)))))).)))....((((...((((..........................................))))...)))) (-10.95 = -11.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:22 2006