Locus 2661

Sequence ID X_DroMel_CAF1
Location 7,140,474 – 7,140,571
Length 97
Max. P 0.948474
window4359

overview

Window 9

Location 7,140,474 – 7,140,571
Length 97
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 83.67
Mean single sequence MFE -24.49
Consensus MFE -17.88
Energy contribution -17.72
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -2.39
Structure conservation index 0.73
SVM decision value 1.38
SVM RNA-class probability 0.948474
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7140474 97 + 22224390
----------AAAAAAAAACCACCUC--UCCACCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUU-CAGCGCACAUG--CGUUAUCGGACCCAA---AUUGGAUUUA
----------................--((((..((.((((((....)))))).))...--...........(((-((((((....)--))))...))))....---..)))).... ( -23.90)
>DroSec_CAF1 8243 109 + 1
CCCUUCCACCUAAAAACACCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUU-CAGCGCACAUG--CGUUAUCGGACCCAA---AUUGGAUUUA
....((((..........................((.((((((....)))))).))...--...........(((-((((((....)--))))...))))....---..)))).... ( -24.00)
>DroSim_CAF1 2610 109 + 1
CCCUUCCACCUAAAAACACCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUU-CAGCGCACAUG--CGUUAUCGGACCCAA---AUUGGAUUUA
....((((..........................((.((((((....)))))).))...--...........(((-((((((....)--))))...))))....---..)))).... ( -24.00)
>DroEre_CAF1 8413 105 + 1
----AACACC---CAACACCCAACAUCAGCAGCCGCCUGCUGCAUUUGCAGCAUGCUUU--AUGCCCCAUAUGUG-CGGCGUACAUG--CGUUAUCGGACCCCAAAUAUUGGAUUUA
----......---......((((.....(((...((.((((((....)))))).))..(--(((((.((....))-.))))))..))--)(((....)))........))))..... ( -27.10)
>DroYak_CAF1 8002 117 + 1
CCCUGCCACCCACAAACAGCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUUAUAUGCCCCAUAUGUUCCAGCGUACAUGCGCGUUAUCGGACCCCAAAUAUUGGAUUUA
.....(((...........((.............((.((((((....)))))).))..((((((...)))))).....((((....))))......))...........)))..... ( -23.45)
>consensus
CCCUUCCACCUAAAAACACCCACCAUCAACAACCGCCUGCUGCAUUUGCAGCAUGCUUU__AUGCCCCAUAUGUU_CAGCGCACAUG__CGUUAUCGGACCCAA___AUUGGAUUUA
...................(((..........((((.((((((....)))))).)).....................((((........))))...))...........)))..... (-17.88 = -17.72 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:21 2006