| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,138,937 – 7,139,053 |
| Length | 116 |
| Max. P | 0.868243 |
| Location | 7,138,937 – 7,139,053 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.14 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.58 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7138937 116 + 22224390 UAAAGAAUAUAACU----AAAAACCAAAAUGCUUAAAACUGCGUGCACUCUAUGAAAAGAUGUAGGUGUAGUUGCACGUUGCGUAAUAUCAACAUUUUUUCUGAGUGCAACGAAAGGAAG ..............----.....((...((((........))))((((((...((((((((((.(((((...(((.....)))..))))).)))))))))).)))))).......))... ( -32.50) >DroSec_CAF1 6783 105 + 1 ---AGAAGAGAACU----GUAAACGAAAAUGCUCGAAACUGUGUGCACUCUAAUAAAAGAUGAAUGUGUAGUUGCAGCUUGCACAAUAUC-ACAUUUUUUCUGAGUGCAACGC------- ---...........----.....(((......))).....((((((((((....((((..(((.((((((((....)).))))))...))-)..))))....)))))).))))------- ( -24.00) >DroSim_CAF1 688 105 + 1 ---AGAAGAGAACU----GAAAACGAAAAUGCUCGAAACUGUGUGCACUCUAACAAAAGAUGAAUGUGUAGUUGCACUUUGCAUAAUAUC-ACAUUUUUUCUGAGUGCAACGC------- ---...........----.....(((......))).....((((((((((.......(((.(((((((((..(((.....)))...)).)-))))))..))))))))).))))------- ( -24.01) >DroEre_CAF1 6890 105 + 1 UCAGGACUAGAACGUUUGUGGAUCGAUGUUGCUCGAAACUGCGGGCACUCUUG-AAAGGAUGAAUGUGUA-------UUUGCUUAGGAUCACCUUUUUUGCUGAGUGCAGCGA------- ............((((((..(.((((......))))..)..)).((((((..(-(((((.(((.(.((..-------......)).).))))))))).....)))))))))).------- ( -25.10) >DroYak_CAF1 6407 102 + 1 UCAAGCUGAGAACU----UAGCUCAAUAUUCCCCAGAAGUGGGGGCAAUCUUA-GGAAGAUUAAUUUGCA------GCUUGCAAAAGAUGCAUUUUUUCUCCGAGUGCAACGA------- ...((((((....)----))))).......(((((....)))))(((.((..(-((((((......((((------.(((....))).)))).)))))))..)).))).....------- ( -27.80) >consensus U_AAGAAGAGAACU____GAAAACGAAAAUGCUCGAAACUGCGUGCACUCUAA_AAAAGAUGAAUGUGUAGUUGCACCUUGCAUAAUAUC_ACAUUUUUUCUGAGUGCAACGA_______ ............................((((........))))((((((....((((((((..(((((((.......))))))).......))))))))..))))))............ (-15.06 = -14.58 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:17 2006