Locus 2655

Sequence ID X_DroMel_CAF1
Location 7,118,204 – 7,118,312
Length 108
Max. P 0.552408
window4349

overview

Window 9

Location 7,118,204 – 7,118,312
Length 108
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 83.82
Mean single sequence MFE -39.04
Consensus MFE -27.50
Energy contribution -30.03
Covariance contribution 2.53
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.70
SVM decision value 0.04
SVM RNA-class probability 0.552408
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7118204 108 - 22224390
UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC-----CAUCUCUCGACCCAAGGAUGCGGACGUCUUU
.....(((((((....((.((((.......)))).))...))))))).((.(((((.(((((((((..(((......-----.)))..))))....)))))))))).)).... ( -39.80)
>DroPse_CAF1 66896 81 - 1
------AGGACCCCUCGCUGAGGGAUGACGCCUCUGUCGUGGUCUACAGCCUCCGUUAUCCUUC-AAGGAUCUCCCU-----C---UCU-----------------GUUCUUU
------.(((..(((...((((((((((((...((((.(....).))))....)))))))))))-))))...)))..-----.---...-----------------....... ( -24.30)
>DroSec_CAF1 109313 106 - 1
UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC-----C--CUCUCGACCCAAGGAUGCGGACGUCUUU
.....(((((((....((.((((.......)))).))...))))))).((.(((((.((((((((((((........-----)--)).))))....)))))))))).)).... ( -39.70)
>DroSim_CAF1 108940 106 - 1
UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC-----C--CUAUCGACCCAAGGAUGCGGACGUCUUU
.....(((((((....((.((((.......)))).))...))))))).((.(((((.((((((((((((........-----)--)).))))....)))))))))).)).... ( -39.70)
>DroEre_CAF1 111733 110 - 1
UCAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUGCA-AGGAUCUACCCCUACCC--CUCGCGGCCCAAGGAUGCGGCCGUCUUU
..(((((((...(((((((..(((((((((...((((((....))))))....)))))))))((.-(((.............)--)).)))))..))))...))))))).... ( -44.52)
>DroYak_CAF1 113473 106 - 1
UGAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUGCGCAGGAUCUACCC-----C--CUCUCGACCCAAGGAUGCGGCCGUCUUU
.((((((((...(((((.((((((((((((...((((((....))))))....)))))))).....(((........-----)--))))))...)))))...))))))))... ( -46.20)
>consensus
UUAUGGCCGACCCCUUGCCGAGGGAUGACGCCUCUGUCGCGGUCGGCAGCCUCCGUUAUCCUUCGAAGGAUCUACCC_____C__CUCUCGACCCAAGGAUGCGGACGUCUUU
..(((.(((...(((((.((((((((((((...((((((....))))))....))))))))))))..((.....))..................)))))...))).))).... (-27.50 = -30.03 +   2.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006