Locus 2653

Sequence ID X_DroMel_CAF1
Location 7,106,152 – 7,106,257
Length 105
Max. P 0.795723
window4344

overview

Window 4

Location 7,106,152 – 7,106,257
Length 105
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 88.26
Mean single sequence MFE -21.12
Consensus MFE -16.92
Energy contribution -16.93
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.80
SVM decision value 0.60
SVM RNA-class probability 0.795723
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7106152 105 + 22224390
CAAGUGCCGCCUCCUCCCCCCCCCCUCCCCC-UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACACACA
...(.((((((....................-..........((((.....))))....((.......))....).))))))..((((....)))).......... ( -17.80)
>DroSec_CAF1 97485 90 + 1
CAAGUGCCGCCUCCUC-----------CCCC-UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACA----
...(.((((((.....-----------....-..........((((.....))))....((.......))....).))))))..((((....))))......---- ( -17.80)
>DroSim_CAF1 97504 90 + 1
CAAGUGCCGCCUCCUC-----------CCCC-UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACA----
...(.((((((.....-----------....-..........((((.....))))....((.......))....).))))))..((((....))))......---- ( -17.80)
>DroEre_CAF1 99106 95 + 1
CAAGUGGCGCCUCCUG-----------CCCCGUACGCUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACGCACA
...(((((...(((((-----------(.....................))))))....)))))..........(((((.....((((....))))....))))). ( -31.10)
>consensus
CAAGUGCCGCCUCCUC___________CCCC_UAUAUUUUAUUCCUAUCGCAGGACACAGCCACAUUUGCAUACGUGCGGCCAAUGUCCCAGGACAAACACA____
...(((..(((...............................((((.....)))).............(((....))))))...((((....))))..)))..... (-16.92 = -16.93 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:08 2006