Locus 2651

Sequence ID X_DroMel_CAF1
Location 7,102,408 – 7,102,506
Length 98
Max. P 0.667066
window4341

overview

Window 1

Location 7,102,408 – 7,102,506
Length 98
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 90.70
Mean single sequence MFE -21.16
Consensus MFE -16.58
Energy contribution -17.38
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.78
SVM decision value 0.28
SVM RNA-class probability 0.667066
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7102408 98 + 22224390
AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCCUUGCCAUCUGCAGCCCAACCGGAUCCCCAUCCAGAGACCAUC---------CUCCAUAUCC
..........((((.(((...(((((.(..........).))))).((((.....)))).......((((....)))).....))).)---------)))....... ( -20.90)
>DroSec_CAF1 93349 98 + 1
AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAUCCCAACCGGAUCCCCAUCCAGAGACCAUC---------CUCCAUAUCC
..........((((.(((...(((((.(..........).)))))..(((.....)))........((((....)))).....))).)---------)))....... ( -21.40)
>DroSim_CAF1 93413 98 + 1
AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAACCGGAUCCCCAUCCAGAGACCAUC---------UUCCAUAUCC
......((((..((.(((...(((((.(..........).))))).((((.....)))).))).))((((....)))).)))).....---------.......... ( -20.40)
>DroEre_CAF1 95516 107 + 1
AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAUCCGGAACCCCAUCCAGAGCCCAUGCUCCACAUCCUCCAUAUCC
..........(((((((((..(((((.(..........).))))).((((.....))))....)))))...........((((....)))).....))))....... ( -24.00)
>DroYak_CAF1 96001 107 + 1
AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAUCCGUAUCCCCAUUCAGCGACCAUCCUCCACAUUCUCCAUAUCC
..........((((.(((...(((((.(..........).))))).((((.....))))........................))).))))................ ( -19.10)
>consensus
AACCCAUUUCGAGGCUGGACAGGCGACGACCCAUCUACCAUCGCCAUUGCCAUCUGCAGCCCAACCGGAUCCCCAUCCAGAGACCAUC_________CUCCAUAUCC
......((((..((.(((...(((((.(..........).)))))..(((.....)))..))).))((((....)))).))))........................ (-16.58 = -17.38 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:06 2006