| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,093,576 – 7,093,668 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 7,093,576 – 7,093,668 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 84.13 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -22.16 |
| Energy contribution | -23.18 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7093576 92 - 22224390 ---G--UGUGUGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUAU------AUGCCCCCUGGGCAG ---.--(((.(..(((((...)))))..).))).(((.(((((....)))))...........-----------(....).((.((((((...------.)))))).)).))). ( -27.90) >DroPse_CAF1 36455 102 - 1 UGUG--UGUGUGAAGAUACAAUAUCUUCUGGCAGUGCGAUUGCGUGUGGCAUACAAACAAACACUAGGCAGGCCAGAGACACAUGGGGCA----------UGCCCCCUGGGCAG ((((--(((((..(((((...)))))((((((..(((..(((.((((.............)))))))))).)))))).))))))((((..----------..))))....))). ( -30.82) >DroSec_CAF1 84663 92 - 1 ---G--UGUGUGAAGAUACAAUAUCUCAGGGCUGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUAU------AUGCCCCCUGGGCAG ---.--(((((....)))))...((((..(..(((...(((((....)))))....)))..).-----------.))))..((.((((((...------.)))))).))..... ( -30.60) >DroEre_CAF1 85370 95 - 1 UGUG--UGUGUGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUAC------AUGCCCCCUGGGCAG ((((--(((((....)))))...((((..(...((...(((((....)))))....))...).-----------.)))))))).((((((...------.))))))........ ( -28.60) >DroYak_CAF1 85904 103 - 1 UGUGGUUGUGCGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA-----------GGAGACACAUGGGGCAUACGAGUGUAUGCCCCCUGGGCAG ((((((((((......)))))).((((..(...((...(((((....)))))....))...).-----------.)))))))).(((((((((....)))))))))........ ( -35.30) >DroAna_CAF1 133084 91 - 1 ---G--UGCGUGAAGAUACAAUAUCCUUUGGCAGUGCGAUUGCGUGAGGAAUACAAACAAACACUG--------GCAGACACAUGGGGCA----------UGCCCCCUGGGCAG ---.--((((((..((((...)))).((((.(((((..(((.(....).))).........)))))--------.)))))))..((((..----------..))))....))). ( -25.60) >consensus ___G__UGUGUGAAGAUACAAUAUCUCAGGGCAGUGCGAUUGCGUGAGUAAUACAAACAAACA___________GGAGACACAUGGGGCAUA_______AUGCCCCCUGGGCAG ......(((.(..(((((...)))))..).))).(((.(((((....))))).............................((.(((((((........))))))).)).))). (-22.16 = -23.18 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:05 2006