Locus 2648

Sequence ID X_DroMel_CAF1
Location 7,083,323 – 7,083,443
Length 120
Max. P 0.999819
window4336 window4337

overview

Window 6

Location 7,083,323 – 7,083,443
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.67
Mean single sequence MFE -46.73
Consensus MFE -45.22
Energy contribution -45.33
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.64
Structure conservation index 0.97
SVM decision value 4.16
SVM RNA-class probability 0.999819
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7083323 120 + 22224390
CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAGCACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAGCAAUCGCCGCAUUUCGCG
.................((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).))........ ( -48.60)
>DroGri_CAF1 171816 120 + 1
CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACAUUGUUAACUCGAGCUCGCCGAGUCCACGACAGAAGCAAUCGCCGCGCUUUGCG
................(((.((((((((((((((((..((((.......))))..))))))))....((((..(((((.(....))))))..)))).....)))))))).)))....... ( -47.80)
>DroSim_CAF1 74471 120 + 1
NNNNNNNNNNNNNNNNNNNNGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAGCACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAGCAAUCGCCGCAUUUCGCG
....................((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..))))))))(((.....))) ( -46.40)
>DroWil_CAF1 166585 120 + 1
CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACAUUGUUAACUCGAGCUCGCCGAGUCCCCGACAAAAGCAAUCGCCGCAUUUCGCG
.................((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).))........ ( -46.40)
>DroMoj_CAF1 176141 120 + 1
CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACAUUGUUAACUCGAGCUCGCCGAGUCCUAGACAGAAGCAAUCGCCGCGCUUUGCG
................(((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).)))....... ( -47.00)
>DroAna_CAF1 116654 120 + 1
CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAGCACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAACAAUCGCCGCACUUUGCG
.................((.(((((((.((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))...))))))).))........ ( -44.20)
>consensus
CAGAUGGAUUUUUACUCGCAGCGAUUGCGUCAGCUUGCGGGCACAACAAGCCCUGGAGCUGGCAACACUGUUAACUCGAGCUCGCCGAGUCCUCGACAGAAGCAAUCGCCGCACUUCGCG
.................((.((((((((((((((((..((((.......))))..))))))))....(((((.(((((.(....))))))....)))))..)))))))).))........ (-45.22 = -45.33 +   0.11)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 7,083,323 – 7,083,443
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.67
Mean single sequence MFE -45.98
Consensus MFE -43.97
Energy contribution -44.50
Covariance contribution 0.53
Combinations/Pair 1.09
Mean z-score -1.78
Structure conservation index 0.96
SVM decision value 2.32
SVM RNA-class probability 0.992284
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7083323 120 - 22224390
CGCGAAAUGCGGCGAUUGCUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAGUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG
.......((((((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..))))))))))))................ ( -47.30)
>DroGri_CAF1 171816 120 - 1
CGCAAAGCGCGGCGAUUGCUUCUGUCGUGGACUCGGCGAGCUCGAGUUAACAAUGUUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG
.......((((((((((((.((.((.((((.(.(((((((((((((((..((....))..)))))..)))))))))).).))))..)).)).))))))))))))................ ( -49.60)
>DroSim_CAF1 74471 120 - 1
CGCGAAAUGCGGCGAUUGCUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAGUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCNNNNNNNNNNNNNNNNNNNN
(((.....)))((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..)))))))).................... ( -41.00)
>DroWil_CAF1 166585 120 - 1
CGCGAAAUGCGGCGAUUGCUUUUGUCGGGGACUCGGCGAGCUCGAGUUAACAAUGUUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG
.......((((((((((((.......(..(((((((....).))))))..)........(((((...((((.......))))...)))))..))))))))))))................ ( -46.70)
>DroMoj_CAF1 176141 120 - 1
CGCAAAGCGCGGCGAUUGCUUCUGUCUAGGACUCGGCGAGCUCGAGUUAACAAUGUUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG
.......((((((((((((...(((....(((((((....).)))))).))).......(((((...((((.......))))...)))))..))))))))))))................ ( -46.60)
>DroAna_CAF1 116654 120 - 1
CGCAAAGUGCGGCGAUUGUUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAGUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG
.......((((((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..))))))))))))................ ( -44.70)
>consensus
CGCAAAAUGCGGCGAUUGCUUCUGUCGAGGACUCGGCGAGCUCGAGUUAACAAUGCUGCCAGCUCCAGGGCUUGUUGUGCCCGCAAGCUGACGCAAUCGCUGCGAGUAAAAAUCCAUCUG
.......((((((((((((..((((....(((((((....).)))))).))))......(((((...((((.......))))...)))))..))))))))))))................ (-43.97 = -44.50 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:02 2006