Locus 2646

Sequence ID X_DroMel_CAF1
Location 7,070,379 – 7,070,473
Length 94
Max. P 0.748347
window4333

overview

Window 3

Location 7,070,379 – 7,070,473
Length 94
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 51.13
Mean single sequence MFE -27.24
Consensus MFE -8.45
Energy contribution -5.68
Covariance contribution -2.77
Combinations/Pair 1.80
Mean z-score -1.20
Structure conservation index 0.31
SVM decision value 0.47
SVM RNA-class probability 0.748347
Prediction RNA
WARNING Mean pairwise identity too low.

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7070379 94 - 22224390
AUAAAGCAGGAGGGACA-------UUGGUGUAGCAAGGGGAAUGCUCGAGUUCCGUUU-UAGUUGAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU
.......((((.(((((-------(((.((.((((.......))))))..((((((..-(((((.....)))))...)))))).))))).))).....)))) ( -24.00)
>DroVir_CAF1 158939 92 - 1
AACAUCUU---UGUUAUAGCUGGAAUCCUUGCAUUGCGCAUCCAACGAAGUUUGUUGC-CCUCUGCGCAGUGUGCAAGGCAUGUGCGCAGCUCAAG------
((((....---))))..((((((.((((((((((((((((..((((((...)))))).-....))))))..)))))))).))...).)))))....------ ( -30.60)
>DroGri_CAF1 151710 91 - 1
AACAUCUU---GGAUGU-------AUCCUUGCAUUGCGCAUCCAACUGAGUUUGUUGC-CCUCUGCGCAGUGCGAGCGGCAUGUGCGUAGCUCAAGCAAGAG
....((((---(.....-------......((((((((((..((((.......)))).-....))))))))))((((.((....))...))))...))))). ( -32.40)
>DroSec_CAF1 61317 91 - 1
AUAAAGCA---UGGACA-------UUGUUGUAGCAAGGGGGACGCUCGAGUUCCGUUU-CAGUUAAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU
........---((((((-------((((((((((....(((((......)))))...(-((......)))))))).......))))))).))))........ ( -22.71)
>DroEre_CAF1 62429 90 - 1
GUGAAACA---GGGACA-------UUGGUGUAGCAGGG-UGAUGCUCGAGUUCCGUUU-CAGAUUAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU
.((((((.---(((((.-------(((....((((...-...))))))))))))))))-))((((.((((((......((....))..))).))).)))).. ( -26.80)
>DroYak_CAF1 62029 92 - 1
AUGAAACA---GGAAGA-------UUGCUGUAGCAGGGGGGAUGCUCGAGUUCCGUUUUCGGUUCGGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU
.......(---(((...-------((((....))))((((.(((((((.(..(((....)))..)..)))))......((....)))).)))).....)))) ( -26.90)
>consensus
AUAAAACA___GGGACA_______UUGCUGUAGCAGGGGGGACGCUCGAGUUCCGUUU_CAGUUGAGUGAGCUAUUUAUGGAGACAAUGCUCCACAGAUCCU
...................................((((((((......))))).)))........(.((((......((....))..)))))......... ( -8.45 =  -5.68 +  -2.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:58 2006