Locus 2645

Sequence ID X_DroMel_CAF1
Location 7,064,073 – 7,064,182
Length 109
Max. P 0.893110
window4332

overview

Window 2

Location 7,064,073 – 7,064,182
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 91.36
Mean single sequence MFE -25.27
Consensus MFE -21.02
Energy contribution -21.47
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.81
Structure conservation index 0.83
SVM decision value 0.97
SVM RNA-class probability 0.893110
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7064073 109 + 22224390
UCAAAAACUGAAGUAAUGCAUCUAGCUAAUCAAAGGUCAAUUAAAAAUUGAGUUUAUUUUUUCCAGUGCGUACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAAAAC
......((((.......((.....))......(((.(((((.....))))).)))........))))(((.((..(((((.....)))))...)))))........... ( -21.30)
>DroSec_CAF1 55071 106 + 1
UCAAAAACUGAAGUAAUGCUUCAAGCUGAUCAAAAAUCAAUUAAAAAUUCAGUUU---UUUUCCAGUGCGCACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAGAAC
..((((((((((.((((((.....))((((.....))))))))....))))))))---))......((((.((..(((((.....)))))...)))))).......... ( -25.60)
>DroSim_CAF1 55516 105 + 1
UGAAAAACUGAAGUAAUGCUUCAAGCUGAUCAAAAAUCAAUUAAAAAUUCAGUUU----UUCCCAGUGCGCACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAGAAC
.(((((((((((.((((((.....))((((.....))))))))....))))))))----)))....((((.((..(((((.....)))))...)))))).......... ( -28.90)
>consensus
UCAAAAACUGAAGUAAUGCUUCAAGCUGAUCAAAAAUCAAUUAAAAAUUCAGUUU___UUUUCCAGUGCGCACGGUCCGCGAAUAGCGGAAAAGUUGCAAAAAUAGAAC
....((((((((.((((((.....))((((.....))))))))....))))))))...........((((.((..(((((.....)))))...)))))).......... (-21.02 = -21.47 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:57 2006