Locus 2643

Sequence ID X_DroMel_CAF1
Location 7,061,124 – 7,061,214
Length 90
Max. P 0.535251
window4330

overview

Window 0

Location 7,061,124 – 7,061,214
Length 90
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 85.10
Mean single sequence MFE -31.84
Consensus MFE -19.87
Energy contribution -20.67
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.62
SVM decision value 0.00
SVM RNA-class probability 0.535251
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7061124 90 - 22224390
GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAGUUGCCAGUUGCCAGUUGCCAGUUGUGCCAG-------UUGCUGGCGGCAA
.........(((.(((..(((((((((.((.........)).))))).)))).))).)))(((((((((........-------..))))))))).. ( -36.80)
>DroSec_CAF1 52157 83 - 1
GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAGUUGC-------CAGUUGCCAGUUGUGCCAG-------UUGCUGGCGGCAA
........(((....)))(((((((((.((.........)).))))).)))-------).(((((((((........-------..))))))))).. ( -32.30)
>DroSim_CAF1 52593 76 - 1
GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAG--------------UUGCCAGUUGUGCCAG-------UUGCUGGCGGCAA
..((((..(((....)))(((((((((.((.........)).)))))--------------.)))))))).((((((-------...)))))).... ( -26.40)
>DroEre_CAF1 53029 78 - 1
GAAACUU-UUGGGGACGAGUCGCUGGUUGCGAGUUGCAAGUUGCAAGUUGC-------CAGUUGCCAGUUGCUGCAG-----------UGGCGGCAA
......(-(((....))))..((((((.((((.((((.....)))).))))-------.....))))))((((((..-----------..)))))). ( -29.60)
>DroYak_CAF1 52152 90 - 1
CAAACUUUUUGGGGACGAGUCGCUGGUUGCGAGUUGCAAGUUGCAAGUUGC-------CAGUUGCCAGUUGUGCCAGUUGCCAGUUGCUGGCGGCAA
...........((.(((....((((((.((((.((((.....)))).))))-------.....))))))))).)).((((((((...)))))))).. ( -34.10)
>consensus
GAAACUUUUUGGGGACGAGGCGCUGGUUGCGAGUUGCAAGUUGCCAGUUGC_______CAGUUGCCAGUUGUGCCAG_______UUGCUGGCGGCAA
.......((((....))))..((.(.((((.....)))).).))................(((((((((.................))))))))).. (-19.87 = -20.67 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:56 2006