| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,057,684 – 7,057,776 |
| Length | 92 |
| Max. P | 0.588258 |
| Location | 7,057,684 – 7,057,776 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -33.10 |
| Energy contribution | -33.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7057684 92 + 22224390 GUCGGGCAUUCAAUGAAUUCAAUUGCCGACGACCGCAGACGGCAAGAGUCGUCGCCGUUGGAUGGACCUGGACCCAACCAAAUGGCACUGGG (((((.((.....((....))..)))))))..((...((((((....))))))((((((((.(((........))).)).))))))...)). ( -33.10) >DroSec_CAF1 49057 92 + 1 GUCGGGCAUUCAAUGAAUUCAAUUGCCGACGACCGCAGACGGCAAGAGUCGUCGCCGUUGGAUGGACCUGGACCCAACCAAAUGGCACUGGG (((((.((.....((....))..)))))))..((...((((((....))))))((((((((.(((........))).)).))))))...)). ( -33.10) >DroSim_CAF1 49487 92 + 1 GUCGGGCAUUCAAUGAAUUCAAUUGCCGACGACCGCAGACGGCAAGAGUCGUCGCCGUUGGAUGGACCUGGACCCAACCAAAUGGCACUGGG (((((.((.....((....))..)))))))..((...((((((....))))))((((((((.(((........))).)).))))))...)). ( -33.10) >consensus GUCGGGCAUUCAAUGAAUUCAAUUGCCGACGACCGCAGACGGCAAGAGUCGUCGCCGUUGGAUGGACCUGGACCCAACCAAAUGGCACUGGG (((((.((.....((....))..)))))))..((...((((((....))))))((((((((.(((........))).)).))))))...)). (-33.10 = -33.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:54 2006