Locus 2639

Sequence ID X_DroMel_CAF1
Location 7,053,438 – 7,053,533
Length 95
Max. P 0.500000
window4326

overview

Window 6

Location 7,053,438 – 7,053,533
Length 95
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 82.57
Mean single sequence MFE -34.98
Consensus MFE -22.89
Energy contribution -23.00
Covariance contribution 0.11
Combinations/Pair 1.16
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7053438 95 + 22224390
ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCG-GAAUUUUGU--GUUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGGC-CCAAAAA
......((((((-...(((((-----((((.......))))((-.(.((((((--(.....)))))))..).)-)......)))))....))))))..-....... ( -31.30)
>DroSec_CAF1 44812 95 + 1
ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGUCG-GAGUUGUGU--GUUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGGC-CCAAAAA
......((((((-.((((((.-----((..(((((....))))-).(((((.(--((.((((.....))))))-).))))))))))))).))))))..-....... ( -33.50)
>DroSim_CAF1 45249 95 + 1
ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCG-GAGUUGUGU--GUUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGGC-CCAAAAA
......((((((-...(((((-----((((.......))))..-..(((((.(--((.((((.....))))))-).))))))))))....))))))..-....... ( -33.60)
>DroEre_CAF1 45233 96 + 1
ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCU-GGGUUGUGU--GCUGUCCACAAGGGAUGCCGAAUAACGCCCCCGGGGUUGGGAC-CCAAAAA
......((((((-...(((((-----((((.......))))..-..(((((..--((.((((.....))))))...))))))))))....))))))..-....... ( -34.20)
>DroYak_CAF1 44562 95 + 1
ACAUAACCCGAC-AUUGGGGC-----GCUAUUGAUUUUGGCCA-GAGUUGUGU--GCUGUCCACAAGGGAUGC-GAAUAACGCCCCCGGGGUUGGGAC-CCAAAAA
......((((((-...(((((-----((((.......))))..-..(((((.(--((.((((.....))))))-).))))))))))....))))))..-....... ( -36.00)
>DroAna_CAF1 88936 95 + 1
------CCGAACAACUGGGGCUGGAAGCUAUUGAUUUUGGCUGGGAGCUGAGCUCCUUGUCCGCCAGGGAUGC-GAGU----CCUCCGGCCACCGGUCACCGGACU
------(((....(((((((((((((((((.......))))).(((.((..((((((((.....)))))).))-.)))----))))))))).)))))...)))... ( -41.30)
>consensus
ACAUAACCCGAC_AUUGGGGC_____GCUAUUGAUUUUGGCCG_GAGUUGUGU__GUUGUCCACAAGGGAUGC_GAAUAACGCCCCCGGGGUUGGGGC_CCAAAAA
......((((((....(((((.....((((.......)))).................((((.....))))..........)))))....)))))).......... (-22.89 = -23.00 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:52 2006