Locus 2636

Sequence ID X_DroMel_CAF1
Location 7,038,495 – 7,038,590
Length 95
Max. P 0.988465
window4322

overview

Window 2

Location 7,038,495 – 7,038,590
Length 95
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 76.49
Mean single sequence MFE -23.54
Consensus MFE -10.21
Energy contribution -11.05
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -2.52
Structure conservation index 0.43
SVM decision value 2.12
SVM RNA-class probability 0.988465
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7038495 95 + 22224390
AAAC-UGAGUAACAUACUUUCGCAAG-----UA-AAACAGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUGCACA----UAUGUGUAACCCCGAUGAUUGCGUA
....-......((.(((((....)))-----))-.....(((((((((.......((..((((((((((.....)))----))))))).))...))))))))))). ( -20.90)
>DroSec_CAF1 29969 92 + 1
ACCUCGAAGUAACUUACUUCCGAAAG-----UA-GAUAUGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUG--------UAUGUGUAACCCCGAUGAUUGCGUA
.....((((((...))))))(....)-----..-..((((((((((((.......(..((((((((...))))--------))))..)......)))))))))))) ( -26.42)
>DroSim_CAF1 29986 92 + 1
ACCUCGAAGUAACUUACUUCCGAAAG-----UA-GAUAUGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUG--------UAUGUGUAACCCCGAUGAUUGCGUA
.....((((((...))))))(....)-----..-..((((((((((((.......(..((((((((...))))--------))))..)......)))))))))))) ( -26.42)
>DroEre_CAF1 29692 98 + 1
AGCAUAAAGUAAUUUGCCUCCGAGAGUUUUUUACUCAAUCCAAUCAUUUUUCUCAGUGCGUGCAUAUGUUAU--------GUAUGUGUAACCCCGAUGAUUGCGUA
.(((..........)))......((((.....)))).((.((((((((.......(..((((((((...)))--------)))))..)......)))))))).)). ( -20.12)
>DroYak_CAF1 28517 89 + 1
ACCAUGAAAUGAAUG----------------UA-AAAAACCAAUCAUUUUUCCCAGUGCAUGCAUAUGUUAUGUACAUAUGUAUGUGUAACCCCGAUGAUUGCGUA
...............----------------..-....((((((((((.......(..(((((((((((.....)))))))))))..)......)))))))).)). ( -23.82)
>consensus
ACCACGAAGUAACUUACUUCCGAAAG_____UA_AAAAUGCAAUCAUUUUUCUCAGUGCAUGCAUAUGUUAUG________UAUGUGUAACCCCGAUGAUUGCGUA
.....................................(((((((((((.......(..((((...................))))..)......))))))))))). (-10.21 = -11.05 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:48 2006